Cololabis saira (Pacific saury): 133450551
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Entry
133450551 CDS
T09849
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133450551 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
csai04990
]
133450551 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
csai04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
133450551 (pdlim5a)
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
133450551
NCBI-ProteinID:
XP_061585238
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Position
9:complement(31686186..31754066)
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AA seq
569 aa
AA seq
DB search
MSSHYSVTLLTPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKAGIAVGDLVLSIDGISTD
GMNHLEAQNKIKNCSGNLSLTLQKDFSGPKPPPVATKGDRSDIIKPVAITHPPPPPHSHP
HFSVPYNKTPRPYGACTLESQYSLTQSPVATVIPSPSSAFTPASLQASPPPPPPPPCPTP
VSYPTSTSSSPPVLVPPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGALPPPFNGV
PRKHVVETDIHFYHVPTHGDASRKRIMEDTEDWRPRTGTTQSKSFRILAQITGTDNVQTE
ETDTAKKTNEEPQLNTHESAVVKTMIKGPASNHGQTPRTGLITPSFGIKGNGIADVPRGP
VPVRPAPQPHPKDEDTLVQMAEHIPAGTRTPMCGNCNMVIRGPFLVAMGKSWHKEEFNCA
HCRSSLSDTGFVEEKGSVYCEHCYEDFLAPTCSRCQDKVLGEVINALKQTWHAYCFLCAA
CQQPIRNNTFHLEDGEPYCEQDFYSLFGTGCHGCEFPVEAGDKFLEALGYTWHDTCFACA
VCSTSLENQTFFSKKDKPLCKKHAHTLKI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccactacagcgtcaccctcttgacccctgccccctggggattcaggctgcag
ggaggaaaggacttcaacatgcccctcaccatttccaggctgacggacggtgggaaggca
gctaaagctggcatagctgtcggagacttggttctttccattgacggtatctctacagat
ggaatgaaccacctggaggcccagaacaaaatcaagaactgcagtggcaacctcagcctc
acgttgcagaaggacttcagtggccctaaaccccctcctgtggcgacgaagggcgacaga
tcagacatcataaaacccgtagccatcacccatcctcctcctccaccccattcccatcct
cacttctctgtcccctataacaagacccccagaccttacggggcctgcactttagagagc
cagtactctctcacacagtcacctgttgccaccgtcatcccctccccatcctctgccttc
actcccgcttcgttgcaagccagccctcctcctcctcctcctcctccttgtccaactcca
gtctcttaccccacttctacctcctcctccccccctgtcctggttccacctcagccatca
gtgtataacacacctatcaacctctactccactgagaatgcgtgtgaggtggccatgggg
cagaggcggggcctgttggagagtcagggcggagccttgccgcctccgtttaatggagtt
ccaaggaaacatgttgtggaaacagacatccatttttaccacgtaccgactcacggtgac
gcgagcaggaagcgtataatggaagacacagaggactggcgcccccgcacgggcaccacg
cagtcgaaatcttttaggattctggctcagatcaccggcaccgacaatgttcaaacagag
gaaactgacacagccaagaagacaaatgaggagcctcaactcaacacccatgagtctgca
gttgtcaagactatgattaaaggacctgcttcaaaccacggtcagactccacggactggt
ttgatcaccccatcttttgggataaaagggaacggtattgctgatgtcccgaggggtccc
gtccctgtccgacccgcgccccaacctcaccctaaagacgaggacaccctggtccagatg
gctgaacatattcctgctgggactcgaacgcccatgtgtggcaactgcaacatggtcatc
agagggccatttttggttgcaatggggaaatcgtggcataaggaggaatttaactgtgcc
cactgccgttcgtccctgtcagatacaggctttgtggaagaaaagggatctgtgtactgt
gaacactgctatgaggacttcctcgctccaacatgcagccgctgccaggacaaagtactt
ggggaggtgatcaatgctcttaaacagacatggcatgcctactgcttcctatgtgctgcc
tgtcagcagccgatcagaaacaacaccttccacctggaggatggagagccgtactgtgag
caagacttttacagtttgttcgggactggatgccatggctgtgagttccccgttgaggct
ggagacaaattcctggaggcgcttggttacacttggcatgacacctgctttgcatgtgct
gtgtgctctacctctctggagaaccagaccttcttttcaaagaaggacaaacccctttgc
aagaaacatgctcatacgctgaagatatga
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