Cololabis saira (Pacific saury): 133450604
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Entry
133450604 CDS
T09849
Symbol
rnf180a
Name
(RefSeq) E3 ubiquitin-protein ligase RNF180 isoform X1
KO
K15708
E3 ubiquitin-protein ligase RNF180 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133450604 (rnf180a)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133450604 (rnf180a)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133450604 (rnf180a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF180_C
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
RING_XB3-XBAT31
zf-RING_6
C1_2
Motif
Other DBs
NCBI-GeneID:
133450604
NCBI-ProteinID:
XP_061585338
LinkDB
All DBs
Position
9:34774731..34783224
Genome browser
AA seq
517 aa
AA seq
DB search
MSFQGGVSVANGSSMEEPGDENRNHETRTTCSKALRTRLKSTDPALEGRSSNMEQLVRPP
LPGRKAHRKTGTEGNRGRWREGNPGRNEDRQRTEHLGAKERERQRLRKVERAETHDERAQ
EKQERGSTDSLSSSNSDVQLSSISEAGERSNNSQRGHAYPKPQGIGFTRTTTTNLNFQST
RPAIQSRSTPLSPQRLPSRPAAGNTHSYSFNARDTDPFWVEVITGAASEQSSPNHQSQTH
NPHATTSEPEEDEDEGNAEDEEEEGSGVVEVMSQAIPTGILLPSVPFGDMRMSKREKNRI
KSLRKRQRRREKWRQSQQQDSRQSSTGNPTTTSSSSSSEDDEAVSMRDKEGFICAVCLDV
YFSPYMCHPCNHIFCEPCLRTLAKNSPTNTPCPLCRTIITHVFFQKELNQTARTFFPKEY
LSRKQIFQKASCAKWPLPSCRKLFRIFGAGFQRQPTPITRRQFPHGGGYRLETMDFEDDS
RGWRFDMDMVIIYIYSVNWIIGFFIFCFLCYIFFPSF
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgagcttccaaggaggagtctctgttgcaaatggctcaagcatggaggaacctggtgac
gaaaacagaaaccatgaaacccgcaccacgtgttcaaaagctttgaggactaggctgaag
agtaccgacccagccttggaaggaaggtcaagcaacatggagcagctggtgagacctccc
ctgcctggaagaaaagcacaccgaaagaccggtactgagggcaacagaggacgatggaga
gaaggaaacccaggaagaaatgaggacagacaaaggactgaacatttaggagccaaggaa
agagaaagacaaaggctaagaaaggtggaaagagctgagacacatgacgagagagcccag
gaaaaacaagaaagaggaagcactgacagtttgtccagcagtaattcggatgttcagttg
agcagcatttcggaagctggagaacgatcaaacaactcacagagaggacacgcatatcct
aaacctcagggaattggctttacccggactactactaccaatttaaactttcaatcaact
cggcctgctatccagtccagatccacacctctgtcaccacaaagacttccatccaggcca
gcagcaggaaacacacacagctactcatttaatgccagagatacagatccgttctgggtg
gaggtgataacaggagctgcatctgaacaatcatctccaaaccatcagagtcagactcac
aacccacatgccaccacctcagaaccagaagaagacgaggatgaggggaatgcggaagat
gaagaggaagaaggaagtggggtggtggaggtcatgagtcaagccatccccaccggaatt
ctgctgccctctgttccttttggggacatgaggatgagtaaaagagaaaagaacaggatt
aaaagtctgagaaagaggcagagaagaagagaaaaatggagacaaagtcaacagcaggac
agcagacagagttcaacagggaacccaacgaccaccagcagcagcagcagcagtgaggat
gatgaggccgtgagcatgagggacaaagaaggttttatctgcgccgtgtgcctggacgtg
tactttagtccttacatgtgtcatccctgcaatcacattttctgtgaaccctgtctgagg
acactggcaaagaacagccccactaacaccccctgccccctgtgcagaacaatcatcacg
catgtcttcttccagaaggagctaaaccagacagcaaggacattctttccaaaggaatat
ctttcccggaagcagatcttccagaaagcaagttgtgcgaagtggcctcttccaagctgc
agaaagctcttccgcatctttggagcaggcttccagcgacagccaactcccattacaaga
cggcagtttccccatggaggaggctaccgcctggaaaccatggacttcgaggacgactct
cgaggttggcgatttgacatggacatggttatcatctacatctactctgtgaactggatt
atcggcttcttcatattctgctttctttgttatatttttttcccttctttttga
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