Cololabis saira (Pacific saury): 133450637
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Entry
133450637 CDS
T09849
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
133450637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133450637
Membrane trafficking [BR:
csai04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
133450637
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
133450637
RAVE complex
133450637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_EML
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_Vps41
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
133450637
NCBI-ProteinID:
XP_061585397
LinkDB
All DBs
Position
9:complement(36248844..36301114)
Genome browser
AA seq
3100 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSFNNVPFTAYASGCDVVILGSNFERLQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSIVCIFEPVQQPDQKDTLLSKLNCQWQKTGQFVLESMVRNLAW
HPTGSTLLTGSSSLQLWSHVDGGKDGGEGSGKQTRMTIQDSCSAWRCIWQIKTASPVCFI
KYSPDGEFFATAGQDDCLVKVWYGTSKWQSSVARLFTPPDSSVSVQGELAFSFVYLAHPR
SVTGFSWRKTSKYMPRGAVCNVLLTSCKDSVCRLWAETILPGDSLISGHHNNHASDQSGE
TANCAGSSRKNTCNGKAQGLTSHEFNFQESRHSSYRDIPLPSLTGCLPHQQNRHYSHKRA
SNGMPHANALCHFHIAASINPATDIPLLPSISSLNAVDDEEPGGPFTVHWLNNKELQFTL
AMEVFLQPLRGSLEQQTECSSEDADDEENLEEDNSCRSSDPKGLEGVELPVAAVEHQVDV
LLEEWNKGADMLFSIHPMDGSLLVWNVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDAIS
LSHSVVMYACNKNVDLAIEHGRQRPPGSSMSQTKSTLISYGGAVKASPSSSLRLSIFTPN
VLMISKHDDGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTS
HHNALRTPEADNILAPPEAYSTGVSYSRSPFHVSRPSRVSLGGVSQDPNAIYSELILWRV
DPVGPLSLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGAYCNSPSACFVASDGQSL
RLYQAVIEAKKLLSELSNPEISKYVGEVFTIISQQSTAKPGCIIELDAITDFQGKETQLL
HVFQEDLILGSVKRADVQGTPDSASSSESAFSARFFLVVVELTPTGRSLLHMWHLHLAAL
PVTMASPMSSSQFINDGLSSPVIQKSKPCTSNLQSACRLSLTTRRLCSQEMALPAGVEAI
SVTPSAGHLSASCSLPAGCVPYLLATSCSDGKVRFWRCSVVMPEPSCTDTFVYQWDEWPL
LVDERLPNSSAVSVSGRPIKVSCCHTGRIAVAYKQMPNTPLNSSPHQNSNGLPSFPPTLA
SSPYVYNSTHLAPSLTVQPSPILHVGPNLMKAKEPLVYISIFQCDSTGGSQWILEQTIVL
NSTDPTASTSAANTVTIPTNIDFSVPNENCPASANKSLVHLDWVSQEDGSHILTVGIGTK
IYMYGRLSGKPPELVLSSDASRDQSMSRLVLLRSVNLVSSVEGSLPIPVSLSWVRDGILV
VGMDCEMHVYSQWQPPVPPKPNIVVVQDTDISSSFSSITSAVRQSQEDVLCSVGPTSLLA
PPKKALTRSMMSLAQKLSGKRTAYDLPVEMEDSGLFEAAHQLFPTLPQYHPVQLLELMDL
GKVHRAKAILSHLVKCIAGEIVTLKDSNTNPEKRLRSRTISVGGSTARDQKIFSQAESSS
PDYTEISSVPPLPLYALLAADEDTPQLDKGGSVSGDSGHGSSQTDAYDELFHTPNMVDLD
PLDNDHEETGNKVIDLSQYSPKDFGPEHAQVLSSHLLHSSLPGLTRMEQMSLMALADTIA
TTSTDLKDNQGKNKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGLSTCHYAW
AFHSDAEEELLNMLPALQKGEPGWPELRSMGVGWWLRSTDKLRRCIEKVAKTSFQRNNDP
LDAAIFYLALKKKAVVWGLYRSQKNAKMTDFFRNNFSEDRWRKAALKNAFSLLGKQRFQH
SAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEYETASTYKKILQRHVLGQDKQI
PAQPDPFLRSIAHWILEDYSRALDTLIEQPANCKSSGSPDSKCDTGSFAVSPCNPEVFNF
YIYLRTHPLLLRRHFGSSDKAKVGLTAEGRRADSISLDERRLFFTTAYAHLHAGCPMLAL
EVLSKMPKVHKHSKLSNQEDTAVAAELSVGSRNGQASDPNWPQSPLNGYESEGNSLSHSH
SDSVLSFDWSQPSLTVPDESLELKWDSDKDDDDDDDEEDHEDDDDQEADEERKEGKCGRT
TDCSVFQDAQDAMSTGLERVISEETEDDDDCIAPSDDILAAQLKFTACLKIMTNELRTLS
TGYELDGGKLRYQLCQWLEREVVALQHCCSYKPCLPESSSQGDTPVSGLVEEEQSGSPYG
DGHRSRRQWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDDSFNSVVAL
SSQPSSIPLLMACTVNVKTVVANPIVYLTNLTHDILQTINSLDSPPHPDVVDNEIYVMHT
LAASLSACIYQCLCDGHRYSHVNHFTGTVYESVLLSQKQPHKTVSMDESVQPNTSPAQWP
GIASLIRLLSSAGEESQPGLAVLLCEVLTAVFLSLFVHGMATHSSNELFRIVAHPLNSKL
WVTVFGGGARIPVIEKPSSPIITPPPASPSGSDRKSRRFRFLSGRSGSREESGMEREGLT
SPKYATVFEQEVPSIFKEQFVPPELSIWDYFIAKPVLSTSENRIDYDSEESQASQDEDDE
DEYEDMLYPNSPQREHSNHNSYSWCLMRLTMVQLVLINLKSFYPVAGYDLLDLPVASPLC
HAVLKTLQRWEQVLQKRLEIFGGPPSNYISTQLHDETPTPGPALLRHKALFEPSNTPFRT
SHHSALPVKRLWQYLVKQEEVQETFIRNIFTKTPGTNQDQTDSLKYSGLDETGNNQTESD
LGSPGGKARIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDD
AEPKGVCGDDFLVVHARDDFATLHGTTPYTHSSPGTPINVPWLGSMQTGRGAAVMIKRNI
NNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGI
VDADGGLSLWQTNMSGNAPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSSDNRNVCLWD
TLVTPANSLVHAFCCHESGATVLAMAPREQLLITGGRKGWISVLELPHRHQRQSFQAHDS
PVKALAVDPTEDCFISGSAEGNIKVWSMATQSLLYTFPNEHARQSLFRNLGTGVMQVEVG
PTNQIFSCGADGTMKLRILPNRFSVNNNRSNLKNDVKFFI
NT seq
9303 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaagtcctcacaggggctgtcaaccctggggacaattgtttctctgtc
gggagcttcaacaatgtgcctttcacggcttatgcgtcaggttgtgacgtggtgattttg
ggcagtaattttgagcggctgcagattatcccaggggccaagcatggtaacatccaggtc
ggatgtgttgactgctcactgcagggtggacagattgcagcttcctatggaagcattgtg
tgtatatttgagcctgtgcagcagccagatcaaaaagacacattattgtccaaattgaac
tgccagtggcaaaaaactggtcagtttgtgttggagtctatggtacggaacttggcttgg
cacccaacaggtagcacactcttgacaggctccagcagcctccagttgtggtcccatgtt
gatggggggaaagatggaggtgaagggagtggaaagcagactcggatgaccatacaagac
tcttgttctgcttggagatgtatctggcagatcaagactgcctctccagtttgttttatt
aagtactcacctgatggggaattctttgctactgctggacaggatgactgcttggtaaag
gtctggtacggcaccagtaagtggcagtcaagtgttgccagactcttcacacccccagat
tccagtgtgagtgttcagggagagctggccttttcctttgtctacctggcccatccccga
tctgttactggtttctcttggaggaagactagcaaatacatgccacggggtgcagtctgt
aatgttctgctcaccagctgtaaggacagtgtctgtcggctttgggcagagacgatattg
cctggtgacagcctcatctctggtcaccataacaaccacgcttctgaccaaagcggtgaa
acagccaactgtgctggcagctcccggaaaaacacctgcaatgggaaggcacaaggatta
acatcacacgaatttaattttcaagaatcacggcattcctcctatcgggatattcccttg
ccctcccttactggctgcctgcctcaccagcagaatcgacattactcccacaagagagcc
agcaatggcatgccccacgctaatgccctctgccacttccacatcgctgccagcatcaac
cctgccacagacattcctctgctaccatccatctcctctctaaatgctgtggatgatgag
gaacctgggggtccatttactgtccactggctcaacaacaaagagcttcaatttacatta
gcaatggaagtctttctgcagccgctcaggggcagtttagaacagcagactgaatgctcc
agtgaagatgctgacgatgaagaaaaccttgaagaagataacagttgcaggtcaagtgat
cccaaaggacttgaaggtgtggagcttcctgtagcggcggtggagcaccaggtggatgtt
ctgttagaggagtggaacaaaggggccgacatgctgttcagtatacatcccatggatggt
tctttgttagtttggaatgtggactggctagacgaataccaacccggcatgttcaggcag
gctcaggtgtcattcgtgtcgcgtatccctgtagcattccctacgggtgatgccatctcg
ctgagtcacagcgtggttatgtatgcttgcaacaagaatgtggatctggctattgaacat
ggcagacagcggccacctgggagctcaatgtctcaaacaaaatctactctgatcagctac
ggaggtgcagtaaaagcttcacccagcagtagtctccgactgagcatcttcacccccaat
gtcctcatgatctctaaacatgatgatggctctctaaatcagtgggcagtcagttttgct
gaagactcagctttctcaactgtgctcagtgtctcccacaaatcccgctactgtggccac
cgtttccacctcaatgacttggcctgtcactccttactcccgcttctcctaaccacctcg
catcacaatgccttgaggacaccagaggcagataacatcctggctcctccagaggcctac
tccactggcgtgtcctattccagatctccgtttcatgtgtcacggcccagccgggtctct
ctgggcggtgtttctcaggaccccaatgcaatttacagcgagctgattttatggagagtg
gatcccgtcggcccgctgtctttgtcaggcggggtttcggagcttgctagaataaattct
cttcatgcatcagcatttgctaatgtggcctggctgcctacgctcattcccagcagctgt
ttaggtgcatactgtaactcccccagcgcctgctttgtagcaagtgatgggcaatcactc
aggctgtatcaggctgttatcgaggcaaagaaactcctgagtgagctctccaatcctgag
atatcaaaatatgttggggaggtcttcaccatcatcagtcagcagtcaacagcaaaacca
ggctgcatcatagaactggatgccattactgactttcaagggaaggagacccagctcttg
cacgtctttcaggaggatctgatccttggcagtgtgaagagagcggacgtacagggaact
cctgattctgcttcctccagcgaatcagcattttctgcacgttttttcctggttgtggtg
gaattgactccaacaggccgttcgctactccacatgtggcatcttcatcttgctgctcta
cctgtcacaatggcgtcgcctatgagcagctctcaattcatcaatgacggactaagttct
ccagtaatccagaagagtaaaccgtgcacttccaatctgcagagtgcttgtcgcctcagc
ctcacaacacgcaggctgtgcagccaagagatggctcttcctgcaggagtggaagccatc
agtgttactccctcagcaggtcacctgagtgcatcgtgttccctaccagctggctgtgtg
ccttacctcctcgctacttcctgctctgatggaaaagtgcgcttctggaggtgcagtgtt
gtgatgccagaaccctcctgtacagacacctttgtgtaccagtgggatgaatggcctctc
ctggttgatgaaagacttcctaacagcagcgcagtaagtgtgtctggtcgccccatcaag
gtgagctgctgtcacactggacggattgctgttgcttacaagcagatgccaaatacaccc
ctgaactcatcgcctcatcagaactctaatggactgccatcttttcctcctactttggca
tcttccccatatgtatacaacagtacacacctggccccttctctgactgtacagcccagc
ccaattctccatgttggcccgaacctaatgaaggcgaaagaaccactggtctacatcagc
atatttcagtgtgactccactggtggttcacagtggattcttgagcagacaatagtgttg
aacagcacagaccccacagctagcacctcagcagcgaacactgtcactattccaactaat
atagacttctctgtacccaatgagaattgccctgcgtctgctaataagagcctagttcac
ctggactgggtctcccaagaggatgggtctcacattttgactgttggtattgggacaaag
atttacatgtacggccgtctgtctgggaagcctccagagctggttctgtcttctgatgcc
agtagagatcaaagtatgtctcgcctggttctgcttcgatcagtcaatctggtctcctct
gttgaaggctcattacccatcccagtttccctctcttgggtacgagatgggatcttggta
gtgggcatggactgtgagatgcacgtgtactcccagtggcaacccccggtccctcccaag
cctaacatcgtagttgttcaagacacagacatcagcagcagcttttcctccataacctca
gccgtcagacagagccaagaggacgtcctctgttccgtgggccccacatctttattagcc
cctccaaaaaaggccctaacgaggtcaatgatgagcctggctcagaaactcagtgggaaa
aggacagcttacgacctgcccgtggagatggaagattctgggctttttgaggcagcgcat
caactctttccaactctaccccagtaccatcctgtacagttactggagctcatggaccta
gggaaggtccaccgtgcaaaagccatcctctcccacctggtgaaatgcattgctggggaa
attgtgacacttaaagacagcaacaccaatccagagaaacgcctgcgctctcgaaccatt
agtgtcggaggcagcacagccagggaccagaagatattcagccaagcagagagttccagt
cctgactacacagagataagctccgtccctcccctgcctttgtacgcccttctggcagcc
gatgaagacacaccacaacttgataaagggggcagtgttagtggagacagtggccatggc
tccagtcagactgatgcttacgatgagctctttcatacacccaacatggtggatttggac
cctctggacaatgatcacgaggaaacaggaaataaggttatagacctgtcacagtacagc
cctaaagactttggtccagaacatgcccaggttctgtccagccacctcctccactccagt
ttacctgggttaacgcgaatggagcagatgtcactcatggcgctagcagacaccattgct
actacaagcaccgatctaaaggacaaccagggcaagaacaaaggaggagagacactggat
gaatgtggcctgaagttcctgctggctgtcagacttcacaccttcctctcaacttcccta
cctccagcgcaccgagcacagctactacggcaaggcctgtcaacatgtcattatgcctgg
gcctttcactctgacgccgaggaggagctgctgaacatgctgccggccctgcagaaggga
gagcccggctggccggagctgcgctccatgggcgtgggctggtggctgcgcagcaccgac
aagctacgcaggtgtattgagaaggttgccaagacctcttttcagagaaacaatgatcct
ctggatgcagctatattttacctagctctgaaaaagaaggcagtggtttggggactgtac
aggtctcagaagaatgcaaaaatgacagattttttccgcaacaacttcagcgaggacagg
tggaggaaagcagcactgaaaaatgccttctccctgctgggaaagcagcgcttccagcat
tctgcagccttttttcttctagccggctccctcaaggatgctgtggaggtgtgtttagag
aaaatgcaggatctgcagctggcccttgtcatctctagattgtatgagtcagaatatgaa
actgcctccacctacaagaagatcctccagaggcatgttttgggacaagacaaacagatt
ccagcccaaccagatccgttcctaagaagcatagcccactggatcctggaagactacagc
agagctttggacactctaatcgagcagcctgctaactgtaaaagctctgggtcccctgac
agtaaatgtgacacgggttcctttgctgtctctccctgtaacccagaggttttcaacttc
tacatctacctccgtacacatccgctactccttcgccgtcattttggctcctcagataaa
gctaaagttggcctgactgctgaaggtcgcagggctgattccatcagcctggatgagaga
agactgtttttcactactgcatacgcacatttgcatgccggttgccccatgctagcactc
gaagttctctccaagatgcccaaagtccacaagcattccaaactctccaaccaggaggat
acggcagttgcagctgagctcagtgttgggagtaggaacggacaagcatcggacccaaac
tggccgcagtcgcctctgaacggctacgagtcagaaggaaacagcttatcccacagtcac
tcagattcagtgttaagttttgattggagtcagccatcactgaccgttccagatgagtcc
ctggagctgaaatgggacagcgacaaagatgatgatgatgatgatgatgaggaggatcat
gaggatgatgatgatcaggaggctgatgaagaaaggaaagaagggaaatgcggtagaact
acagactgcagtgtgtttcaagatgcgcaggatgccatgtcaacagggctggaacgagtg
ataagtgaggagactgaagacgatgatgattgcattgctccatctgatgacatcttggca
gctcagctcaagttcactgcctgcttgaagattatgaccaatgagctgcgcacgctgtca
acggggtacgagttggatggagggaagctccggtaccagctctgccagtggttggaaaga
gaggttgtggctcttcagcattgctgcagttataaaccttgcttgccagagtcatcttcc
caaggtgatactccagtttctggactagtagaggaggaacagtctgggagcccctatggt
gatggccacaggagcaggagacagtggctgcagagtaaccagcctttactccgaatgttt
ctgagctactgcagcttacatggctcccacggtggaggactggcttctgtacgcatggag
cttatattgctgcttcaagagtctcaccaggatgactctttcaattcggtggttgcactg
agttcccaacccagctccatccctcttctcatggcttgtacagtcaatgtaaagacagtt
gtggccaatcccatcgtctatttgaccaacctgactcatgatatcttgcagaccatcaat
tcactcgactctccaccacatcctgatgttgttgacaatgagatctacgtgatgcacacc
ttggctgcttccttgtctgcttgtatatatcaatgtctttgcgacggacacagatacagt
catgtaaaccatttcacagggactgtgtatgaaagtgtcctgctgtctcagaagcagcca
cacaaaactgtgagcatggacgagtctgttcagccaaacacttctcctgctcagtggcca
ggtatcgcctctctcattcgtctgttgagctcagcaggtgaagagagccagccaggctta
gctgtgttgctgtgtgaggtcctgactgccgtcttcctcagcctttttgttcacggcatg
gccactcactccagcaatgaactgtttcgcatcgtggcccacccgctcaacagcaagcta
tgggtgacagtgtttggaggtggcgcccggatccctgttattgagaaacccagcagtcca
ataataacacccccgccagcctcaccaagtggctctgacagaaaatccagacgattcagg
tttctctcaggacgcagtggatcgcgggaagaatctgggatggagcgggaggggctaacc
agtcccaaatacgctactgtttttgagcaggaagttccttccatcttcaaagaacaattt
gtccctccagagctgagtatttgggattattttatcgccaagccggtactgtccacatca
gaaaacagaattgattatgactctgaggagagccaggccagccaagatgaggatgatgaa
gatgaatatgaagacatgctttaccccaactctccacagagagagcattcaaatcacaac
tcttacagttggtgtttgatgcggctgacgatggttcaactggtgttgatcaacctcaag
tccttttacccagtggcagggtatgatctattagatttgcctgtggcctcgcctctgtgt
cacgctgtgctcaaaactctgcagcgctgggaacaggtgctgcagaaaagactggagatc
ttcggggggcccccttcaaactatatctccactcagctccacgatgaaacccccacacct
ggccctgccctgctccgacacaaagccctgtttgaaccatccaacaccccattcagaact
agccaccattcagcgctgccagtgaaacgtttatggcagtatttggtgaagcaggaggaa
gtgcaggagactttcattcgaaacatcttcacaaagacaccgggcacaaatcaggaccag
accgacagtctgaaatattcaggattggacgagacaggaaacaatcagactgagtcagat
ctgggatcgcctggaggaaaagcacgcatcatccacaaagaatctgacatcatcacagct
tttgccatcaacaaggcaaaccgtaattgtttagtcatggcgtccacccatgacattcag
gagctggatgtttcatctatcttggccacacagatcctgacgtggattgatgatgatgat
gctgaacccaaaggtgtttgtggtgatgacttcctggtcgtccatgcacgtgatgatttt
gccacgctccacggcacaacaccttacacccacagcagccctgggacacccatcaacgtg
ccctggctggggagcatgcagacaggcagaggtgcagctgtgatgatcaagagaaatatc
aacaatgtcagaagaatgacctcccatcccacacttccgtactacctgaccggtgctcag
gacggcagcgtgaggatgtttgagtggggtcactcccagcagatcatctgcttcagaagt
ccaggcaactccagagtcaccaggataagattcaaccaccagggaaacaagtttggtatt
gtagatgctgatgggggtttgagtctctggcagaccaacatgagtgggaacgcaccaaag
ccctacctgacgttgcagtgccacaacaaaacggctcatgactttgtcttcgtgggatct
tcctccctcattgccactgcagggctttcatcagacaacaggaatgtttgtctgtgggat
acactagtgactcctgctaacagccttgtacacgctttctgctgtcacgagtctggtgcc
accgtgctggcgatggcccccagggagcagctgctgatcacaggcgggaggaaaggctgg
atcagcgtcttggagcttccccaccggcaccagcggcagagtttccaggctcatgactcg
ccagtcaaagctctggctgttgatcccactgaggattgcttcattagcggatcagccgag
gggaacatcaaggtgtggagcatggccacgcagtctctcctctacacgtttccaaacgaa
cacgcccggcagtcgctgttcaggaacctggggacgggcgtgatgcaggtggaggtggga
ccgaccaaccagatcttctcctgcggcgccgacggaacaatgaagttgaggatcctcccc
aaccgtttcagtgtgaacaacaaccgcagcaacctcaagaatgatgtcaagttcttcata
tag
DBGET
integrated database retrieval system
