Cololabis saira (Pacific saury): 133451530
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Entry
133451530 CDS
T09849
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133451530 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133451530 (cnot6l)
Enzymes [BR:
csai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133451530 (cnot6l)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133451530 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133451530 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
type_II_gspD_N0
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
133451530
NCBI-ProteinID:
XP_061586640
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All DBs
Position
9:complement(17987775..18007947)
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AA seq
552 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMSAEEAAGGKKSHWAELEISGRVRSLSSSLWDLTHLTALHIND
NNLSRIPPDIAKLPHLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMSP
TVAFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQ
YYTLFLETLKDRGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDVFSGMKPQQERQLILVANAHMHWDPEYS
DVKLIQTMMFLSELKSIAERASGSLGTGSPTSDPCSIPIVLCADLNSLPDSGVVEYLSNG
GVAENHKDFKELRYNECLTNFNCNGKNGNSDGSITHSFQLKSAYDSNLMPYTNYTYDFKG
VIDYIFFSKTHMSVLGLMGPLDSQWLVDNSIIGCPHPHIPSDHFSLLAQLELHPPPPHPL
NPLNGLHLPVHR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgtagatgttacaccatcatgtcagct
gaggaggcagctggtgggaagaagtctcactgggctgagcttgagatatctgggcgggtg
aggagtctgagcagctcattgtgggaccttacccacctaaccgcgctccacatcaacgat
aataacctgagccgcatccctccggacatcgccaagctgccccacctggtctacctgaac
ctgtcgtccaataagctccgcagtctgcccgcagaactgggcaacatggtctctctcagg
gaattacttttaaacaacaatcttttacgagttctgccttatgaacttgggaggcttttc
cagttacaaactctgggtctaaaaggaaatcctttgtcccaagacatccttaacctgtac
caggagcccgatggaaccagaaagcttttgaactacatgcttgacaatctagcggtgcac
ccagagcagctgccccaaagaccttggatcactctcaaagagcgagaccaaatgagcccc
acagtcgcgttcacggtcatgtgctacaacgtgttgtgtgacaagtacgccacgcgacag
ctgtacggctactgtccctcgtgggccttgaactgggagtaccggaagaagggcatcatg
gaggagatcaccaactgcgacgctgacatcatcagcctgcaggaggtggagacggagcag
tactacacgctgtttctggaaacactaaaggatcgtggctacgacggctacttctgtccc
aaatcgcgtgccaaactggtttctgaacaggagaggaaacacgtggatggctgtgcggtg
tttttcaagacggaaaagttcactttagtgcaaaaacacacggtggagttcaatcaggtg
gcaatggccaactccgagggctccgaggtcatgctgaacagagtgatgaccaaagacaac
atcggagtggccgtgctgctggaggtcaacaaggacgtgttctctggcatgaaaccgcaa
caggagcggcagctgatcctggtggcgaacgcccacatgcactgggacccagagtactcg
gacgtcaagttgatccaaaccatgatgttcctgtcggagctgaagagcatcgctgagagg
gcctcgggctccttggggactgggtctccgacctctgacccctgctccattcccatcgtc
ctgtgtgctgaccttaattcactgcctgactcgggtgtggtggaatacctgagcaacggc
ggagtggccgagaaccacaaggacttcaaggagctacgctacaatgaatgtctgaccaac
ttcaactgcaacggcaagaacggcaactcggacgggagcatcactcacagcttccagctg
aagagcgcctacgacagcaatctgatgccttacactaactacacgtacgacttcaagggt
gtcatcgactacatcttcttctcgaagacgcacatgagcgtcctgggcctcatgggtccg
ctcgacagccagtggctggtggacaacagcatcatcggctgcccgcatccccacatcccc
tcggaccacttttccctgctggcccagctggagctgcaccctcccccgccccacccgctc
aacccgctcaatgggctgcacctgccggtccacaggtag
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