Cololabis saira (Pacific saury): 133451567
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Entry
133451567 CDS
T09849
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133451567 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133451567 (smarca2)
03036 Chromosome and associated proteins [BR:
csai03036
]
133451567 (smarca2)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133451567 (smarca2)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
133451567 (smarca2)
Chromatin remodeling factors
BAF complex
133451567 (smarca2)
PBAF complex
133451567 (smarca2)
GBAF(ncBAF) complex
133451567 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
133451567
NCBI-ProteinID:
XP_061586709
LinkDB
All DBs
Position
9:complement(20504640..20570704)
Genome browser
AA seq
1620 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNTPHGM
QGPGQSEYSQDGMYPLHKPMEGMNDKAMAEAMHFGHMKGVGMRSLHSGMGPPQSPMDQHS
QGYMSPHPSPMGVHEHASSPMSGGGGGPTPPHMPPSQSGPLMPMDPQGGMANMSSMGQQG
RGPSAFSPVQLQQLRAQILAYKILARGQPLPENLQLAIQGKRSLPTMQQQQQQQQQQQQQ
QQQQQQQQQPPQQQQQQVSNASPYRPSAMPMAPMGGPQSSPCPTPAMQGHNQSTAPRPWT
EGQSGENQASAQKHLPSVPSGRPSPAPPQTSAVPPGPISGGSAAAQPPGQQVSPMLQMQQ
KQNRITPVQKPQGLDPMGILQEREYRLQARIAHRIQELESLPGSLTPDLRTKATVELKAL
RLLNFQRQLRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKK
RRQKHQEYLNSILQHAKDFKEYHRSVSGKMQKLTRAIATWHTNTEREQKKETERIEKERM
RRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTALVYEHKAAQAAKEKKRKKKKK
KKVDGDGEGTSAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMN
PGYEVAPRSDSEESGSEFEEEEEDETTRTEAEEKKLLDANGDEVYERAAKHIIESAKQDV
DDEYSVPTGEPSSASYYGVAHAVIERVEKQSSLLINGMLKHYQIQGLEWMVSLYNNNLNG
ILADEMGLGKTIQTIALITYLMELKRLNGPYLIIVPLSTLSNWVYELDKWAPSVVKIQYK
GTPALRRGLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQ
VLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD
LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVVKCDMSAIQKVLYRHMQKGI
LLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFSHIEESFAEHLGYPNGIISGPDLY
RASGKFELLDRILPKLHATNHRVLLFCQMTTLMTIMEDYFGYRNFQYLRLDGTTKSEDRA
ALLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ
NEVRVLRLCSVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ
NESHRTTSSPSECISQEEDEVPDDETLNQMIARNEDEFELFMRMDMDRRREDARNPKRKP
RLMEEDELPSWIIKDDAEVERLTYEEEEEKMFGRGSRCRRDVDYSDALTEKQWLRAIEDG
NLEEMEEEIRLKKRKRKRRHDKDSSSRDESSSSKARKRRGRPPVEKLSPNPPKLTKQMNT
IIDTVINYRDGSARQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVRSHKYRNVGDL
EKDVMLLCQNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDDSEEDDDDDYESE
AEAKSVRVKIKLGRESRGHDKGKKRQSRGKAKPVVSDDDSDDDDDQDDNDQSDKSKSDDE
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccctcagacacatcaggaggcatgtcccatcctggcccgtctcctggggcg
ggtctgtctccggggcccatcttgggccccagcccaggtccagacccttcaccggggtcc
gttcacagcatgatggggcccagcccgggacctggaacacccaacactcctcacggcatg
cagggcccgggacagagcgagtactctcaggatggcatgtatcctctgcacaagcccatg
gagggcatgaacgacaaggcgatggcagaggccatgcattttggccacatgaaaggtgtt
gggatgagatccctccacagtgggatgggacctcctcagagtccaatggaccagcacagc
caaggatacatgtctccgcacccatcccccatgggagtccacgagcatgcgtctagtccc
atgtcaggaggtggaggtggacccactcccccccacatgcctccctctcagtcgggcccc
ttgatgcccatggatcctcaaggaggcatggccaacatgtccagcatgggccagcaggga
cgagggccgtccgccttcagcccggtccagctgcagcagctcagagctcagatccttgcc
tacaagattctggcccgcggacagccgctgcctgaaaacctccagctggctattcagggc
aagagaagccttcccacaatgcaacagcagcaacagcaacaacagcagcagcagcaacaa
caacaacaacaacagcagcaacaacagccgccgcaacaacagcaacagcaggtgtctaat
gcaagcccttaccggccttcagctatgccaatggcacccatgggtggtccccagtcaagc
ccctgcccaacccccgccatgcaaggacacaatcaaagcacagcacccaggccgtggacc
gaaggtcagagcggcgagaatcaggccagtgctcagaagcacctcccgtctgtccccagt
ggccgcccgtctccggcaccgcctcagacctcggcggttcctcccgggcccatctccggc
ggctcggcagcagctcagcccccagggcagcaggtgtcgcccatgctccagatgcagcag
aagcagaaccgcattacaccggtccagaagccccagggcttggacccaatgggcatcttg
caggagagagaatacagattgcaggctcggattgctcatcgaatccaggaactggagagt
ctgccgggctccttgactcctgacctgaggactaaagctacggtggagctcaaagcgctg
cgtctactcaacttccagcggcagctgaggcaggacgtggtggcgtgtatgaggcgagac
acgaccctggagacagccctcaactccaaggcttacagacgcagcaaacggcagactctg
agggaggcgcgcatgacggagaagctggagaagcagcagaagctcgagcaggaaaagaaa
cgcagacagaaacatcaggaatatctcaacagcattcttcagcatgcgaaagacttcaag
gagtaccaccgctcagtgtccggcaaaatgcagaaactcacccgcgccattgccacctgg
cacaccaacacggagagggagcagaagaaggagacggagagaatcgaaaaggagaggatg
aggagactcatggcggaagatgaggagggttaccgaaaactcatcgatcaaaagaaggac
aagcggctggcgtacttgctgcagcagacagatgaatacgtggccaacctcactgctctg
gtgtacgaacacaaagctgctcaggctgccaaggaaaagaagagaaagaagaagaaaaag
aagaaggtggacggagacggtgaaggaaccagcgccatcggacccgatggggagcccatg
gatgagagcagccagatgagcgagctgccagtcaaagtcatccagacggagactggaaaa
gtgttgcagggaacggacgctcccaagtccagccagctggaggcctggctcgagatgaac
cccgggtacgaagttgctccgcggtcggacagtgaggaaagcggctccgagtttgaggaa
gaggaagaagatgagacgaccaggacggaagcggaggagaagaagctgctcgacgccaac
ggagacgaagtgtatgagcgggctgccaagcacatcatcgagtcggccaaacaggacgtg
gacgatgagtacagcgttcccaccggggagcccagctctgcgtcctactacggagtggct
cacgccgtcatcgagagggtggagaagcagtcgtccctgctgatcaacggcatgctcaag
cattaccagatccagggcctggagtggatggtgtctctgtacaacaacaatctcaatggt
atcctggctgatgaaatgggtctgggcaaaaccatccaaaccatcgctctcatcacctac
ctgatggagctcaagaggctcaacggaccctacctcatcatcgtccctctctcaactttg
tcgaactgggtctacgaactcgacaaatgggcgccctctgtggttaaaattcaatacaag
ggcacacctgctctgcgccgcgggctcgtcccccagctccgcagtgggaagttcaacgtc
ctgctgacaacctatgaatacatcattaaggacaagcacatacttgcgaagattcgttgg
aagtacatgatcgtggacgagggccatcgcatgaagaaccaccactgcaagctgacccag
gtgctgaacacccactacgtggccccccgccgcctcctgctgaccggcacgccgctgcag
aacaagctgcccgagctgtgggcgctgctcaacttcctgctgccaaccatcttcaagagc
tgcagcaccttcgagcagtggtttaacgcgccattcgccatgacgggagagcgggtcgat
ctcaacgaggaggagaccatcctgatcatccgccgcttgcacaaggtgctccgccccttc
ctgcttcgccgactgaagaaggaggtggagtctcagctgccagagaaggtggagtacgtc
gtaaagtgtgatatgtctgccatacagaaggtcctgtaccgccacatgcagaaaggcatc
ctcttgacggacggatcagagaaagacaagaagggtaaaggaggagccaagaccctgatg
aacaccatcatgcagctgaagaagatatgcaaccatccgtacatgttctcgcacatcgag
gaatcctttgctgaacacctgggttacccgaacggcatcatcagcgggccggatctgtat
cgagcttctgggaagtttgagctcctggatcgtatcctgccgaagctgcacgccaccaac
cacagagtgctgctcttctgccagatgaccactctgatgaccatcatggaggattacttc
ggctatcgcaactttcagtatttacgtctggacggaaccaccaagtcagaggacagagct
gcactgttgaagaagtttaacgaggaagggtctcagtacttcatcttcctcctcagcacc
agagccggcggcctcggcctcaacctgcaggctgctgacaccgtggtcatcttcgacagc
gactggaacccccaccaggatctccaggcccaggaccgagctcaccgcatcggccagcag
aacgaggtgcgcgtgcttcgtctctgcagcgtcaacagcgtggaagagaagatcctagca
gccgccaagtacaagctgaacgtggaccagaaggtcatccaggcagggatgtttgaccag
aagtcctccagccacgagcgccgggccttccttcaggccatcctggagcacgaggagcag
aacgagagccaccggactacgtcatcgccctcagaatgcatttcgcaggaggaagatgag
gtacctgatgacgaaaccctcaaccagatgatagcccgcaacgaggatgagtttgaactc
ttcatgcgcatggacatggaccgccgcagagaagacgccaggaacccgaagcgaaagcct
cgtctgatggaggaggacgagcttccctcctggatcatcaaagatgacgccgaggtggag
aggctcacctacgaggaggaagaggagaagatgtttggtagaggatcccgctgccgtcgc
gacgtggactacagcgacgccctgaccgagaaacagtggctacgggccattgaggatggg
aatctggaggagatggaggaggagatccggctgaagaagcgcaaacgcaagagacgtcac
gacaaagactcatcgagccgagacgagagcagcagcagcaaggcccggaagagacgcgga
cgaccgccggtggagaagctgtcccccaacccccccaagctcaccaagcagatgaacacc
atcatagacacggtgatcaactacagagacgggtcagcgagacagctgagtgaagtcttc
gtccagctcccgtccaggaaagaactcccggagtattatgagctgatcaggaaacccgtg
gatttcaagaagatcaaggaacgtgtcagaagccacaaatacaggaacgtgggggacctg
gagaaggacgtgatgctgctctgtcaaaacgcacagaccttcaacctggagggctctcag
atatacgaggactccatcgtcctccagtcggtgttcaagagcgccagacagaagattgcc
aaggaagaagagagtgaggatgacagcgaggaggacgatgatgatgactacgagtcagag
gctgaggccaagtcggtgcgggtgaagatcaagctgggcagagagtcgcgcggtcacgac
aaaggaaagaagaggcagagccgggggaaggccaagccggtggtcagcgacgacgacagt
gacgacgacgacgaccaggatgataacgatcagtcggacaagagcaagagtgacgacgag
tga
DBGET
integrated database retrieval system
