Cololabis saira (Pacific saury): 133452016
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Entry
133452016 CDS
T09849
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03030
DNA replication
csai03410
Base excision repair
csai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133452016 (zgc:110269)
03410 Base excision repair
133452016 (zgc:110269)
03450 Non-homologous end-joining
133452016 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csai03032
]
133452016 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
csai03400
]
133452016 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csai04147
]
133452016 (zgc:110269)
DNA replication proteins [BR:
csai03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
133452016 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
133452016 (zgc:110269)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
133452016 (zgc:110269)
Exosome [BR:
csai04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133452016 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
HHH_5
C5orf34_2nd
NPR1_interact
Motif
Other DBs
NCBI-GeneID:
133452016
NCBI-ProteinID:
XP_061587186
LinkDB
All DBs
Position
10:complement(32749315..32755055)
Genome browser
AA seq
350 aa
AA seq
DB search
MGITKLADLIRSDAREAVSYKDINDYTGKVIALDTSIVVNQFRTATPSLSPLTGLFFRTL
TFLEYDIKPVFVFDGTPPKEKIPVLEKRAEAAGLGPPRRTGIASAQMRDCVELLKYLGVP
TIQAPGDAEALCAGLVREGTVDAVSSEDMDTLPFGAHILIRQLNAKKDSEVVEYSLPKLL
DILQISQEELVDLSILLGCDYCDKIPGLGPKRALTLIQKHRSIENVVLHVNRKTHPVPHF
WKYKEARKIFLDTPHVPIPELIWTEPDEEALVGFLCHVKHTKEARVRHRMQMFREKRKNK
REEREKEKEKAAGIKKQSRIEDFFRVTRKRQQPVEVASPLSGNKKKSKYK
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggggatcactaaactggctgatctgatccgctcagatgctcgcgaggccgtttcctat
aaagatatcaatgactacacagggaaagtaattgctctggatacgtctattgtcgtgaac
cagttccgaacagctacgccttcactgagccccctgactggtctcttctttcgcaccctc
accttcctggaatatgatatcaaacccgtctttgtatttgatggaacgccgcccaaagaa
aagatacctgtgcttgagaagcgggctgaagccgctggcttgggcccccccagacggaca
ggcatagcatcggcccagatgagggattgtgttgaacttctgaagtatctgggcgttcct
acaatccaggctccaggggacgctgaggcactgtgcgccggcctggtgagagaggggact
gttgacgcagtttcatctgaggacatggacactctgccgtttggagctcatattctcatc
cgccagctgaatgccaaaaaggacagcgaggtggttgaatattccttacccaaactgcta
gacatactccaaattagtcaagaggagcttgttgacctctctattctgctgggctgcgac
tactgtgacaagataccgggtttgggtccaaagagagctctgactctgatccagaagcac
cgcagtattgaaaatgtggttttgcacgtcaatagaaagactcatcctgtcccacatttc
tggaaatacaaagaggcaagaaagatattcttggatacaccacacgtcccgattcctgag
ctcatctggaccgagccggatgaggaggctttggtgggcttcctctgtcacgtcaaacac
accaaggaagcgcgggtccgtcatcgaatgcagatgtttcgcgagaagcgaaaaaataag
cgagaggaaagggaaaaggaaaaggagaaggctgcaggaatcaagaagcagagtcggata
gaagacttcttcagagttacgagaaagaggcaacagcccgtggaagttgcatcaccttta
agtggcaacaaaaagaaatctaaatataaataa
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