Cololabis saira (Pacific saury): 133452025
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Entry
133452025 CDS
T09849
Name
(RefSeq) RNA exonuclease 5-like isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133452025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csai03009
]
133452025
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
Pre-60S particles
RNases
133452025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
133452025
NCBI-ProteinID:
XP_061587199
LinkDB
All DBs
Position
1:complement(28780362..28791565)
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AA seq
805 aa
AA seq
DB search
MEPFSCLDMEPCSSLAAMSDRKKRKNSDPASYEKPKRLKTGQEDDEVLQRGRRSGQARVS
VPADHLQQPITLTELTELLHFAALGKTRGIKQPSWCRIRHQKKIQGVNVVIVEGLTQSHF
YKNYLTMEHLRTNYTTRVTFTPSSNNIASGIFSSEVLQADGSSVSEPDKTLHKALKQHPV
ITMFGTQRRGLTAYVLTEEKMIKNRYPVKGMPGFEDFVCTDSFDCVNDTSPLYGLDCEMC
LTEKGYELTRVSLVDSDGNCLLDDLVKPPNRILNYLTQFSGVTAAMLQPITTTLRDVQAK
LRRLLPGDAVLVGHSLNNDLMALKLIHKHVIDTTLLYRRELGQKFKLKVLAETVLKRQIQ
SEENRGHNPTEDAVAALNLAQYFIKTGPRQVVELHLEDLWGYTVVDEFHDCAPEPTPSHR
FADVLERCGRSVLYLGKRADITLELSNQRWYSADKEMLASFRRQTKCPFLSVLQFSTFSE
PLTTDFPQQEQLYRSVCANLRDMCVVFAGPFPAGVTKKEVKRLFSCCGPVRRIKLLNTSV
RVHAEVEYELLEGATLALKTLSGFSWLGQPLKVQRPVHESLLDLDLNLDALTADSLNANY
VFAVKLSHHMAQRVNISTKVNGHILDGKCSNVTPARAENGFPPAEIKIRELHEETVRETF
GHFGAVESVILPDKHEKHAKHACIKFKSSEGKHCALSSSKDLLKDNYLICPSLTPPHLPS
WVAMTTAVTAVDADEEAADEQRMTYTHNSSQDQEMDLMMKKLDRWLGKAFRSLPDGTLSV
VLLRGHTIANGHHPGLCLLQIKHGS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggagcctttttcctgcttggacatggagccgtgctcatccctcgcagcaatgagcgac
aggaagaagaggaagaacagcgaccctgcatcatatgagaaaccaaagagactgaagaca
gggcaggaagatgatgaagtgctgcaacgtggacgtcgctctggtcaagccagggtctca
gtaccggccgaccacctgcaacagccgatcacactgactgagctgacagagctgctgcat
tttgctgctctggggaaaactagaggcatcaaacagcccagttggtgccgtatccgtcat
caaaaaaagattcaaggtgtaaatgttgtgattgtggaggggctgacacagagtcacttc
tacaagaactatctcaccatggaacaccttcggaccaactacaccacaagggtcactttc
actccgtcatctaacaacatagcttctgggatcttcagcagtgaagttcttcaagcggac
ggttcctctgtttcagaaccagataaaactctgcataaagctcttaaacaacatccagtc
atcaccatgttcgggacacagaggcgaggattaactgcgtatgttctcaccgaggaaaag
atgattaagaatcgctaccctgtcaagggaatgccgggctttgaggactttgtttgtaca
gacagctttgactgtgttaatgacaccagccctctctatggacttgactgtgaaatgtgt
ctaacagagaaggggtatgagctgactcgcgtctctctggtggacagtgatgggaactgt
ttgttggacgatctggtgaaacctccgaaccgtatcttgaactacctcacccagttctct
ggtgtcactgcagcgatgttgcaaccaatcaccaccaccctgcgggatgttcaagcaaaa
ctcaggaggctgttgccaggcgacgctgttcttgtgggccattccctcaacaatgatctc
atggctctgaaactcatccacaaacatgtcattgacaccacacttctgtacaggagggag
ttaggtcagaaattcaagctcaaagttctggctgagacggtgctaaagaggcaaatccaa
tctgaagagaacaggggtcataatcccaccgaagatgcggtggcagccctgaacctggcc
cagtactttatcaaaacagggcctcggcaggttgtggagcttcatttggaggacctgtgg
ggatacacagtagtggacgaatttcacgactgtgctcctgaaccaacaccaagccacagg
tttgctgacgtgctagagagatgtggccggtcggtgctctatttaggaaagcgtgctgac
attacactggaactgtccaatcagcggtggtacagcgctgacaaagagatgctggcatct
tttaggagacagacgaagtgtcccttcctctccgtcctccagttctccaccttctcagaa
cccctgacgacagacttccctcaacaggagcagctgtaccggagtgtgtgtgctaatctc
cgggacatgtgtgtggtgtttgcggggccgtttcctgcaggagtcacaaagaaggaagtg
aagcggctgtttagttgttgtggaccagttcgaagaatcaaattgttgaacacaagtgtt
cgggtccatgcagaggtagagtatgagctgctggaaggagcaacgctcgctttaaaaact
ctcagtggattcagttggctgggccagcccctcaaggtgcagaggccagtacacgagtca
ctgttggacctggatctgaatctcgatgctttaacggccgacagcctcaacgcaaattac
gtgttcgctgttaaactgagtcaccacatggctcagcgtgtaaacatttctacaaaggtt
aatgggcatatattggacggaaagtgctcaaatgtcactcctgcaagagccgagaatggg
ttccctcctgctgaaattaagattcgagaattacacgaggagactgtcagagagaccttt
ggccactttggtgctgtggagagtgtcatactacctgacaaacatgaaaaacatgcaaag
catgcatgcataaagtttaagagttcagagggaaaacattgcgccctcagctcgtctaaa
gatctgctgaaggacaactacctcatttgtccatccctgactccacctcacttaccttca
tgggttgccatgacaacagcagtgactgcagtggatgcagatgaggaagcagcagatgag
cagagaatgacctacacacacaacagctctcaggatcaggaaatggatctcatgatgaag
aagctggatcgctggctgggaaaggccttccgatccctcccagatggcaccttgtctgtg
gttttgctacgtggacacaccattgcgaacggccaccatcctggtttgtgtcttttgcaa
atcaaacatggatcttga
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