Cololabis saira (Pacific saury): 133452377
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Entry
133452377 CDS
T09849
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
csai01002
]
133452377 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133452377 (vcpip1)
Enzymes [BR:
csai01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
133452377 (vcpip1)
Peptidases and inhibitors [BR:
csai01002
]
Cysteine peptidases
Family C64
133452377 (vcpip1)
Ubiquitin system [BR:
csai04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
133452377 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
Zn_ribbon_RPAB4
Motif
Other DBs
NCBI-GeneID:
133452377
NCBI-ProteinID:
XP_061587627
LinkDB
All DBs
Position
10:8571230..8594934
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AA seq
1178 aa
AA seq
DB search
MSLLQGSKRKDRRVLSGTCPDLRCQARLFFPAGGPIECTECGRRHEQRSLLHVEEVTDPD
VVLHNLLRSALLGAAGAGGAGAGAPGGAGAGAAGAPGGPRKGSELVKVMGLSNYHCKLLS
PVLTRYGMDKQSGRAKLLRDMNQGEMFDCALLGDRAFLIEPDHVATMGYGKDRSGSLAYL
HDTLEEVKRANGDRECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRENLKQNFKQNLE
RYKALFQDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSG
MSSSGDYAATFLPGLVAEERCRGKDGRLHRPICIAWSSSSRNHYIPLVGIKNTALPRLPP
HLLPKAWGVPQELIRRYVRLEPDGSLVIGGDRSLQDKYLMRLVNAMEEVFMEKHGIHPSL
VADVHQYVYRRTGVIGVQPEEVTEAAKRSVTENRLHRCLICGALSELHVPPDWLSPGGKL
YNLAKSTHGQLRPDKNYSFPLNNVVCSYEPQADVLVPDYKLSSLGTCTWCHGTSVRHVRG
DGSAVYLDGDRTNTRSHGGKCGCGFKHYWDGKEYDNLPEAFPITLEWGGRVVRESVHWFQ
YEAEAALNSNVYDVAMRLVTKHFPGEFGSELLVQKVVNTILHHTARRNPDEYNPVSVDGA
HARRLTDDAAPPDPQPPTKIILTGQKAKTLHKEELTMSRAERSVQQSISEQAAVAQRRRT
DQLRQEQRSQGWTSPPAGGSPEASSSSAPATPTKSSSPSQSGGEKKIRVTTSDGRQATLT
LRPGTTFPELQRSIAAQLGVPPAQQCIRYGFPPRELAPPRDGEEDEPVALQHGDRVTVEI
LKGPEDQGPPTPAETPASGSQAAPPHPGKSDDAAVATSRAASRELQDSIDLEMSSLCLLA
TLMGEDVWSYAKKLPHLFQQGGVFYNIVKKDMGLMDGKHCTLPHLTGKTFVFNAAQQRLE
LCVDAAGHFPVGPEVEELVKEALLQLGGSRGSREGSPSHGVLRLGSGGVVRKKEALQNVT
AFQGKGHSLGSSGGSSPPEHRPITRQHSSGVDLSASVSRGPPDLSDIPEDTTRELVRMAP
GFVTTKDGRGLDPSLMEQQRRKLQEMVSSIQASMERHLREQQGAAAAAGGGAKTDQPAPA
TAAGAKPPAAEGAAGGKPEEPEDMESQDAGATEPMDHS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgctgcagggctccaagcggaaggaccggcgcgtcctgtcgggcacctgcccg
gacctgcgctgccaggcgcggctcttcttcccggccggcggccccatcgagtgcacggag
tgcgggcggcggcacgagcagcgcagcctgctgcacgtggaggaggtgacggacccggac
gtggtgctgcacaacctgctgcggtcggcgctgctcggcgcggccggggccggaggagca
ggggccggggcccccgggggggccggggccggggcagcaggggcccccgggggcccgcgg
aagggcagcgagctggtgaaggtgatggggctctccaactaccactgcaagctgctgtcg
ccggtgctcaccaggtacggcatggacaagcagagcggccgggccaagctgctgcgggac
atgaaccagggggagatgtttgactgcgcgctgctgggcgaccgagccttcctgatcgag
ccggaccacgtggccaccatgggctacggcaaggaccggtccggcagcctggcctacctg
cacgacaccctggaggaggtgaagcgggccaacggcgaccgcgagtgcctgatcccggtc
cacgtggacggggacggccactgcctggtgcacgccgtgtcccgggcgctggtgggccgc
gagctgttctggcacgccctccgcgagaacctcaagcagaacttcaagcagaacctggag
cgctacaaggccctgttccaggacttcatcgacgcagcggagtgggaggacatcatcaac
gagtgcgacccgctgttcgtgccgcccgagggcgtccccctggggctgcgcaacatccac
atcttcggcctggccaacgtgctgcaccggcccatcatcctgctggactcgctgagcggc
atgagcagctccggcgactacgccgccaccttcctgccgggcctggtggccgaggagcgc
tgccgcggcaaggacggccgcctccacaggcccatctgcatcgcctggagcagctccagc
cgcaaccactacatccccctggtgggcatcaagaacacggcactgcccaggctgcccccc
cacctgctgcccaaggcctggggcgtcccgcaggagctcatccggaggtacgtccggctg
gagccggacggcagcctggtgatcggcggcgaccgcagcctgcaggacaagtacctgatg
cggctggtcaacgccatggaggaggtgttcatggagaagcacggcatccacccgtcgctg
gtggccgacgtgcaccagtacgtgtaccggcgcaccggcgtcatcggcgtccagcccgag
gaggtgacggaggcggccaagaggtcggtgacggagaaccggctgcaccgctgcctgatc
tgcggcgccctttcggagctgcacgtcccgccggactggctgagccccggcgggaagctc
tacaacctggccaagtccacgcacggccagctgcggcccgacaagaactacagcttcccc
ctcaacaacgtggtctgctcctacgagccgcaggccgacgtcctggtcccggactacaag
ctcagctccctgggcacctgcacctggtgccacggcacctcggtgcgccacgtccgcggc
gacgggtctgccgtgtacctggacggggaccggaccaacacccgctcccacgggggcaag
tgcggctgcgggttcaagcactactgggacgggaaggagtacgacaacctgcccgaggcc
ttccccatcacgctggagtggggggggcgggtggtgcgcgagagcgtgcactggttccag
tacgaggcggaggcggcgctgaacagcaacgtgtacgacgtggccatgcggctcgtcacc
aagcacttccccggcgagttcggcagcgagctgctggtgcagaaggtggtcaacaccatc
ctgcaccacacggcccggaggaacccggacgagtacaaccccgtgtccgtggacggggcg
cacgcccgccgcctcaccgacgacgcggcgccgccggacccgcagccccccaccaagatc
atcctgacgggccagaaggccaagacgctgcacaaggaggagctaacgatgagccgggcg
gagcgcagcgtgcagcagagcatcagcgagcaggcggccgtcgcccagcggcgccggacc
gaccagctgaggcaggagcagcggagccagggctggacgtccccccccgccggcgggtcg
cccgaggcctcctcctcctctgccccggccacgcccaccaagtcctcctcgccgtcccag
tccggcggggagaagaagatccgcgtgacgaccagcgacgggcggcaggccacgctgacg
ctgcggcccggcaccaccttcccggagctgcagcgcagcatcgccgcgcagctgggggtc
ccgcccgcgcagcagtgcatccgctacggctttccgccgcgggagctggcgccgccgcgg
gacggcgaggaggacgagccggtggcgctgcagcacggcgacagggtcacggtggagatc
ctgaagggccccgaggaccagggccccccaacgcccgccgagaccccggcgtccggctcg
caggcggcgcccccccacccggggaagagcgacgacgccgctgtggcgaccagcagggcg
gcgagccgggagctacaggacagcatcgacctggagatgtcctccctctgtctcctagca
accctgatgggcgaggacgtttggtcgtacgccaagaagctgccgcacttgttccagcag
ggaggcgtcttctacaacatcgtcaagaaagacatgggcctgatggacgggaagcactgc
acgctgccccacctgaccggtaagaccttcgtgttcaacgcggcgcagcagcgtctggag
ctgtgcgtggacgcggcgggccacttccccgtggggcccgaggtggaggagctggtgaag
gaagccctgctgcagctggggggttccaggggcagccgggagggcagcccgtcccacggc
gtcctgcgcctcggcagcgggggcgtcgtccggaagaaggaggcgctgcagaatgtcacc
gccttccagggcaagggccactccctgggcagctctgggggctcctcccccccggagcac
cggccaatcacgcgccagcacagcagcggcgtggacctgagcgccagcgtgtcccggggc
ccgccggacctgtcggacatccccgaggacaccacgcgggagctggtgcgcatggcgccg
ggcttcgtgaccaccaaggacgggcgcggcctggacccgtccctcatggagcagcagcgc
cgcaagctgcaggagatggtgtcctccatccaggcgtccatggagcgccacctgcgggag
cagcagggcgccgccgctgccgccgggggcggggctaagacagaccagccggcgcctgct
accgcggccggcgccaagcctccggcggcggagggagcggcgggcgggaagccggaggaa
ccggaggacatggagagccaggacgccggcgccaccgaacccatggaccactcctga
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integrated database retrieval system
