Cololabis saira (Pacific saury): 133452687
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Entry
133452687 CDS
T09849
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133452687 (rc3h1b)
04121 Ubiquitin system [BR:
csai04121
]
133452687 (rc3h1b)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133452687 (rc3h1b)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133452687 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
FYVE
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
NS3_helicase_C
Baculo_IE-1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
133452687
NCBI-ProteinID:
XP_061588212
LinkDB
All DBs
Position
10:complement(25073695..25099574)
Genome browser
AA seq
1145 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTVISTD
IEQLPVNTALLQLVGGQVPKAQPIALITSPEDSQNYEVARQCVEELALYLKPLSNTRGVG
LSNTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRIAARSGGLFPDDCLPIDVAGGRKSSPLP
NGSTAPNLPQLIARGTDTPSYELMPKMDGDSPSAPGSPPDVLNPVPKPGMPLPPHAMAHP
RMPDPYLSGVKHMPVVPRSSAVYSQPQPSEMCYEARPPPASQYGPSQYQTASSPSVNLNR
IKMGYPYQQPPQYVPREEHYIRNPPPPSDPGHPYQDPYPGYGHPERAYPAPHSSLPFSYP
HPPHYDRSRHGPYSGPPLPPQPYPSQRDDLVRMSPAPVDVPPPSAGQSNSLYHQEPSGRD
RYPPDGYYPPGNQPPTMRTYVRGSAYSGSQPSLDYLHRRRQELISQLEERKVISPPPFAA
SPTLSHPFPSDYTSEFGDDGSKTMVKCRESDYAGQYSPWSCETIGSYIGTKDPKPKDIMV
PGTMEMMNVEAKGLRESSMEVPRRAAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTT
GPIQAMASTLQNPGSKHMAMSAAEYSYGSHGGWGGPSYPSHQAASSSQGHFSERLPMAAP
DREQLKIELQQVNQQITQQTQLHSIEAASNSSLLQREASALAGQATQSNQGQTAVTAQQQ
QPKWPAGGASATAVSSEQLSMELHQVEREIGKRTREMAMENQVAHDVQQYKMKPSENGQP
EHKTQLEEISLVLGEVSNGSSSLQESAMGGPMLSLTNKTSALSLCSDPGTAGSEMQKNGV
VHSCS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagtttctgctgtgcccaatctgcacacagaca
tttgaggagactgttcgccggcccatcagcttgggctgtggacatacggtctgcaagatg
tgcctgaacaagctgcaccgaaaggcctgtccttttgaccagacagttatcagcacagac
attgaacagctacctgtcaacaccgccctattgcagcttgtgggaggccaggttcctaag
gctcaaccaattgccttgatcactagcccagaggactcccagaattatgaggtggctagg
cagtgtgtcgaggaactggccctttaccttaaacccctcagcaacactcgaggtgtgggt
ctgagcaacacagcccaaagtatgctgagtcggcccatgcaaaggaaactggtaactctg
gtacactgccagctggtggaggaagaaggtcgtgtaagagctatgagagctgcccgctct
cttggggagcgcactgtcactgaactcatcttgcagcaccagaatccacaacaactctcc
tcaaacctgtgggctgctgttcgtgctcgaggatgtcagtttctaggcccagcaatgcaa
gaggaagctcttaagttggtccttcttgctttagaagatggctcggctttatccaggaaa
gtgttggttctctttgtggtccagaggcttgagccacgcttccctcaggcttctaaaact
agcataggccatgttgtacagctcctttacagagcctcctgcttcaaggttaccaaacgc
gatgaagactcatccttgatgcagttgaaagaggagtttcgtacttatgaggctctgcga
cgcgagcatgactctcaaattgttcagattgccatggaaggtggattgcgcattgcaccc
gaccagtggtcttctttgttgtacggggatcagtctcacaagtctcatatgcagtctatt
atagataagttgcagaccccggcatcttttgctcagagtgttcaggagcttactattgca
ctgcaaaggactggagaccctgccaacctaaacagactgcggccccacctggaactactg
gccaacattgatcccagccctgatgctcctcctcctacgtgggagcagcttgagaagggc
ttggtagcagtaaaaactgtggtacatggacttgttgacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaaatacaagacatacatgtgccgt
gacatgaagcaaaagggaggctgtcctcgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtaccgtaagatgaataagcgtattgcagctcgctcaggagggctt
tttccagatgattgccttcctattgacgtagcagggggccggaagtcctcaccccttccc
aatggcagtactgcaccaaatttgccccaacttattgcccgtggcactgatacaccatca
tatgaactcatgcccaagatggatggagacagtcctagtgccccagggtcgccacctgat
gtcttgaaccctgttcccaaacccggtatgcctctgccacctcatgcaatggcccaccca
agaatgccagatccttacctctcaggagtgaagcatatgcctgtggtacccaggagttca
gctgtgtattcccagccacagccctcggaaatgtgctatgaggctcgtccaccacctgct
tctcagtacgggccctcacaataccaaacagcatccagcccctctgtgaacctgaacagg
attaaaatgggttacccttaccaacaaccaccacagtatgttcctcgggaggaacattac
attcgtaaccctccgcccccgagtgatccaggacatccttatcaggacccctaccccggc
tacggccacccagagcgcgcctacccggccccgcactccagcctgcccttctcttatcct
caccctccgcactatgacaggagccgccacgggccctacagcggccccccacttccccca
cagccttacccgtctcagagggacgacctagtcagaatgagtccagcacctgtggatgtt
cccccaccatcagcaggacagtctaactcgctctaccaccaggagccaagcggccgggat
agatacccacccgatggctattatcctccaggcaaccagcctccaactatgaggacttat
gtcagaggctcagcatacagtggttcacagcccagcctggactacttgcatcgacgtcga
caggagctgatatcccaactagaagaaaggaaggtcatttcccctccaccatttgctgca
tccccgactctttcacatccctttcccagtgattacactagtgagtttggcgatgatggc
tccaaaacgatggtgaaatgcagggagtctgactatgcagggcaatactccccttggtct
tgtgaaacaattggctcctatattggcacaaaggatcccaaacccaaagacattatggtt
cccggtaccatggagatgatgaatgtggaggctaaaggactaagggagtcatcaatggag
gttcctcgcagagcggcagaagtaaaggacgatgaccccattatcccatttggtccccaa
cccactgtgtcacgttttggcgccatctctcgtacttcaaagacaggctaccagaccact
ggccctatccaggccatggcctctactctgcagaaccctggctccaaacacatggccatg
tcagcagcagaatactcatatggaagtcatggagggtgggggggaccctcatacccctcc
caccaggcagcatcttcttctcagggacacttcagtgagcgccttcctatggcagcccca
gacagagaacagctaaagattgagctgcagcaggtcaaccagcagatcacccaacagact
cagttgcacagcatagaggctgccagtaattcttcactcctgcagagggaagctagtgct
ttggcaggtcaggctacacagtccaaccagggccagacagcagtgactgcacagcagcaa
cagcccaagtggccagcagggggcgcaagtgcaacagccgtctccagtgaacagctcagc
atggagctccaccaggtggaacgagaaattggcaaaagaacccgtgagatggctatggaa
aaccaagtagcccatgatgttcagcagtacaagatgaagccttcagagaatggacagcca
gagcataagactcaactggaggaaatctccctggttcttggtgaagtgtccaatggctcc
agcagtctgcaagaaagtgcaatgggcgggcccatgttgtcactgacaaataagacatct
gcattgagcctgtgttctgatccaggtaccgctggttcagagatgcagaaaaatggtgtt
gtccattcctgctcttag
DBGET
integrated database retrieval system
