Cololabis saira (Pacific saury): 133452930
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Entry
133452930 CDS
T09849
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03013
Nucleocytoplasmic transport
csai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133452930
03015 mRNA surveillance pathway
133452930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133452930
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133452930
5.6.2.5 RNA 5'-3' helicase
133452930
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133452930
mRNA cycle factors
Common to processing body (P body) and stress granule
133452930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
AAA_22
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
133452930
NCBI-ProteinID:
XP_061588678
LinkDB
All DBs
Position
10:34086529..34120411
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AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQALLFLDGEDAELLGADTQGSGYDYTDFTLPSQSQSQNQNQTLNQNLNQL
DSQVNGVLHNGDNPLKSSQLLAELNFEEDEEDICYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIINHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQDQLRARQITA
QQINKLEELWKESPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLALPWKGIGH
VIKVPDNYGDEIAIELRSSAGVPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVVMKCQLPKRFTVQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHSQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRAAERELLMNADVICCTCVG
AGDPRLAKLQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKAFDIQW
PQADKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPGQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPINNLRESLMQFSKPRKL
VNTINPGGRFMSSVMYDAKEVLSSGSVCDRSSNGRTSNMYFHTHDQIGVIGTGPGPMSSM
NIPIPFNLVMPPLSPSGYLGQLNIAGEGMKSKPGGGGTRGSRQRGRGNMGNHGAAGGGGE
QHGGHMSGSQASQDHGSQPFSQGPLTQAYMSQPSQMSQPGLSQPELSQESFLGDEFKSQM
DVALSQDSTYQGERAYQPGGVAGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacggcccgagctcgcaggcgctgctgttcctggacggcgaggac
gccgagctgctgggagcagacacgcagggctccgggtacgactacacggacttcaccctg
ccgagccagagccagagccagaaccagaaccagaccctgaaccagaacctgaaccagctc
gacagccaggtcaacggtgtgctgcacaacggagacaaccccctgaaaagcagccagctg
ctggccgagctgaacttcgaggaggatgaggaggatatctgctacaccaaggacctgccg
ctgcacgcctgcagctactgtgggattcacgatccagcctgtgtggtctactgtaacacc
agcaagaagtggttttgtaatggtcgcggtaacacatctggcagccatatcataaaccac
ctggtgagggccaagtccaaggaggtgaccctacataaagacggccctctgggggaaacc
gtgttggagtgctataactgcggatgtcgcaacgtctttctgctgggcttcatccctgcc
aaggccgactcggtggtggtgttgctgtgcaggcagccgtgtgcgagccagagcagcttg
aaggacatcaactgggacagctcccagtggcaacctctcatccaggaccgctgcttcctg
tcctggctggtgaagatcccctcggagcaggaccagctccgggcacgccagatcaccgcc
cagcagataaacaagttggaggagctctggaaggagagtcccagtgcgactctggaggac
ttggagaagcccggggtggacgaggagcctcagcacgtcctgcttcgctatgaggacgcc
tatcagtaccagaacatctttggaccgctggtgaagctggaggccgactacgataagaaa
ctgaaagagtcgcagactcaagacaacataacagtcagatgggatctcggtctcaataag
aagaggattgcttatttcacccttccaaagacagactctgacatgcggctgatgcaggga
gatgagatctgcctcaggtacaaaggagacctggctcttccctggaagggcattggacat
gtcatcaaagtccctgacaactacggagatgagatagccatagagctgaggagcagcgcg
ggcgttcccgtggagatccctcacaactttcaggttgactttgtctggaagtcgacctcc
tttgacaggatgcagagtgccctgaaaacgtttgccgttgatgaaacgtcggtctctgga
tacatctaccacaaactgctgggacatgaggtggaggatgtggtgatgaagtgccagctg
cccaagcgcttcaccgtccaaggattacctgacctcaaccactctcaggtgtatgctgtg
aagacagtgctgcaacgccccctcagtctgatccagggcccccctggaacaggaaaaact
gttacctccgccaccattgtgtaccacttggctagacaaggcaatgggccagtgctggtt
tgtgctccgagcaacatagctgtggaccagctgactgagaagatccaccagacggggctc
aaggtggtgaggctctgcgccaaaagcagggaggccatagactcgcccgtgtccttcctg
gctctgcacagccagacccgcaacatggacagcatgccagagcttcagaagctgcagcag
ctgaaggacgagactggagagctgtcctcctccgacgagaaacgctacagagctctgaga
cgcgctgctgagagagaacttctcatgaatgctgatgtgatctgctgcacgtgcgtcgga
gcaggagatcctcgcctggccaaactgcagttccgatcaatcctgattgacgagagcacc
caggccaccgagcccgagtgcatggtgcctgttgttctgggagccaaacaactgatcctg
gtgggcgatcactgccagctggggccggtggtgatgtgtaagaaggcggctaaagccggt
ctctcgcagtctctgtttgaacggctcgtggttctggggatccggcccattcgtctgcag
gtccagtaccgcatgcacccggccctcagcgctttcccctccaacatattttacgagggc
tctctgcagaacggagtcactgctgctgaccgggtgaaaaaagccttcgacatccagtgg
ccacaagctgacaagcccatgttcttctacgtcacgcaaggccaggaggagatcgccagc
tctgggacgtcgtacctcaacagaactgaagctgccaatgtggagaagatcacgacgaga
ctgttgaaggctggagccaaaccgggtcagatcggcatcattaccccgtatgagggacag
aggtcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctctaccag
gaggtggaaatagccagtgtggacgctttccaaggcagagagaaagacttcatcatcttg
tcttgcgtgagggcgaacgagcaccaaggcattggtttccttaatgatccccgccgtctc
aacgttgctcttaccagagccaggtatggggtgatcattgtggggaaccccaaagctctg
tccaagcagcctctgtggaaccacctgctaaattactacaaggagcagaaggtgctggtc
gaggggccgatcaacaacctgagagagagtctgatgcagttcagcaagccccgcaagctg
gtcaacaccatcaaccccgggggtcgattcatgagttcagtcatgtatgacgccaaggag
gtgctgagctctggatctgtttgtgaccgcagcagcaacggacgcacgtccaacatgtat
ttccacacccatgaccagatcggtgtgatcggcaccgggcccggtcccatgtcgtccatg
aacatccccatccccttcaacctggtgatgccccctctcagtccctcggggtacctggga
cagttgaacattgcaggtgaagggatgaagagcaagccaggcggtggtggcactcgaggc
agccgtcaaagaggccgtggcaacatggggaaccacggtgcggcgggtggagggggggag
cagcacgggggccacatgagcggcagccaggccagccaggaccacggctcccagcccttc
tcccaggggccgctcacgcaggcctacatgagccagccgtcccagatgagccagcccgga
ctctcccagcctgaactctcacaggagagtttccttggagacgagttcaagtcccagatg
gatgtggctttgtcccaggactccacctaccagggggagcgggcctaccagcctggtggc
gtggccggactatcccagtactag
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integrated database retrieval system
