Cololabis saira (Pacific saury): 133452960
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Entry
133452960 CDS
T09849
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM63-like
KO
K10654
tripartite motif-containing protein 55
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133452960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133452960
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
133452960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-B_box
RING_XB3-XBAT31
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
Sina_RING
SHE3
Spore_III_AB
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
133452960
NCBI-ProteinID:
XP_061588718
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All DBs
Position
10:34713345..34732239
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AA seq
431 aa
AA seq
DB search
MDSLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQASNPYLSTRSGSTVTSGGRF
RCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQGSSSKPVQEVKQEQPMCETHEDEKLN
IYCLTCSTPTCSLCKVFGAHKDCEVAPLNDVFSRQKTELTDCISMLVGNNERIQAIMNQL
DETCRTIDENGRRQKSKVCETFDRLFALLEEKKGEMTVKINAEQVEKLDYIRGLRNKYSE
HLEGAAKLLETAFQIMEEPEMAVYLQTAKPLLQKLLEGTNHSHLDTVQRGYEKMDHFTAN
FEQQRKALAEVDFIKLDEDDDEDEEDVELRGLTGGSNTEPQQAAPVAAARPPANQPPPLS
PVLSPTPQRTSEAPPTPTPLTKSPVPSPSSQTPNPLPLPTTSPAPQSDQQGDSDDKDGPK
HVFSFSWLNQK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggacagtctggagaagcagctcatttgtcccatctgtctggagatgttcaccaagccg
gtggtcatcctgccatgtcaacacaatctgtgtcgcaagtgtgccaacgacatcttccag
gcatccaatccctacctgtccacaagaagtggctccactgtgacatccggcgggcgtttc
cgctgcccatcctgccgacatgaggtggttctggaccgacatggagtctatggactgcag
aggaacctgctggtggagaacatcatcgacatgtacaagcaggggagctccagtaaaccc
gtccaggaggtgaagcaggagcagcccatgtgtgagacccatgaggacgagaagctcaac
atctactgtctgacttgttccacccccacctgttctctctgtaaggtgttcggcgctcac
aaagactgtgaggtggcgcccctcaatgatgtcttcagccggcagaagacggagctgacg
gactgcatttccatgctggtggggaacaatgagaggattcaggccatcatgaatcagctg
gatgaaacctgcagaaccattgatgaaaacggccgtaggcagaaatcaaaggtgtgtgag
acattcgatcgcttgttcgcgctgctggaggagaagaaaggtgagatgacggtgaagatc
aatgctgagcaggtggagaagctcgactacatccgaggtctgaggaataagtacagcgag
cacctggaaggcgccgccaagctgctggaaacggccttccagatcatggaggagccggag
atggccgtgtacctccagacggcaaaacctctgctgcagaaactcttggagggcaccaac
cattcccacctggatacagtccaaagaggctatgagaagatggaccacttcacagctaac
tttgagcagcagagaaaagcgctggcagaggtcgacttcatcaaacttgatgaagacgac
gacgaagatgaggaagatgtggagctcagaggcctgacagggggaagtaacactgagccg
cagcaggctgcacctgtagcagctgcacgaccgccggccaatcagccacctccactctca
cccgtcctctcacccaccccccagaggacatcagaggccccgcccaccccaaccccactg
acgaagagccctgtcccatcaccttccagccagacacccaatcctttgcccctccccacc
accagccctgcccctcagtcggatcagcagggcgactcagatgacaaagatggacccaaa
catgtcttctccttcagctggctcaaccagaaatag
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