KEGG   Cololabis saira (Pacific saury): 133453019
Entry
133453019         CDS       T09849                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai04115  p53 signaling pathway
csai04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    133453019 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    133453019 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csai04121]
    133453019 (cop1)
Enzymes [BR:csai01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133453019 (cop1)
Ubiquitin system [BR:csai04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133453019 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133453019 (cop1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_EML zf-RING_UBOX Beta-prop_DCAF4 zf-C3HC4_3 Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-RING_10 WDR90_beta-prop_4th zf-rbx1 UvrD-helicase Beta-prop_SPT8 zf_C2H2_10 Sina_RING
Other DBs
NCBI-GeneID: 133453019
NCBI-ProteinID: XP_061588831
LinkDB
Position
10:complement(37539155..37554980)
AA seq 716 aa
MSGGRPQQPGCVGGSVPGTSGSSSGSSSAAGAAGAAGSNGVTSNQSNGSPAGSVAPRPAA
AAASEGGSAVPSLATVPSSRGGFASLSRPTATSGSRKKSLHPAPLYNGLLNSYEDKSNDF
VCPICFEMIEEAHMTKCGHSFCYKCIRQSLQDSNRCPKCNYIVDNVDQLYPNFLVNELIL
KQKQRSEEKRLKLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQA
AQRQILMEFLKEARRNKREQLDQLQKELNFLEEDIKRVEEMSGRYSPMTEAECTVPNVEA
PAPTPSCSSIMESSDYSQPPGFGGTAQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSSK
MSRITDEGRNLNQLDDFMECLSKFTRYNTVRPLATLSYASDLYNGSSIVSSIEFDRDCDY
FAIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTV
ILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAK
ANVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVS
ASTDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTL
LTFKFDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgtcgggcggccggccgcagcagcccggctgtgtgggggggtccgtgcccggcacgagc
ggcagcagcagcggcagcagcagcgctgcgggggccgccggagccgccggcagcaacgga
gtgaccagcaaccagagcaacgggagccccgccgggagcgttgccccccggccggcggcg
gccgcggccagcgagggcggctccgccgtgcccagcctcgccacggtgccctcgtcccgg
ggagggttcgcctccctcagcagacccaccgccacctcggggagcaggaagaagtccctc
cacccggcaccgctgtacaacggcctgctcaactcctacgaggacaagagcaacgacttt
gtttgtcccatctgcttcgaaatgatagaagaggcacacatgacaaagtgtggacacagt
ttttgttataaatgtatacgccagagcttacaggacagcaaccgatgccccaagtgtaac
tatattgttgataatgtggatcagttgtatcccaactttcttgtaaatgagctgatcctt
aaacagaaacaaaggtcggaggagaagagactgaaattagatcatcctaatgggtctcgg
tggcaggtcttccaggacgttttgagtcctgatcaggaaaacttggatcttgcgaacgtc
aatctaatgttggagctccttgttcagaaaaagaagcagctggaagcggagtcccaagca
gcgcagaggcagatcctcatggaattcctcaaagaagccagaagaaataaaagagagcaa
ctagaccaactacagaaagaactcaacttccttgaagaagacatcaagcgtgttgaagaa
atgagtgggcgttactctccaatgacggaggcggagtgtacagtgcctaatgttgaggca
ccagctccaacacccagctgcagtagtatcatggagtcatcagattacagccagcctcca
ggatttggtggaacagcccagggaaaacggcagacctggtacaacagcactctggcatca
agaagaaagaggctgacggctcattttgaggatctggagcaatgctacttctccagcaaa
atgtcacgcatcacagatgagggcaggaacctgaaccagttggacgattttatggagtgt
ttgtctaaatttacacgctacaacactgtgcggccgctggccaccctgtcctacgccagt
gacctctacaacggctccagtattgtctctagtattgagtttgaccgtgactgtgactac
tttgccatcgctggtgtgaccaagaagatcaaagtgtttgagtatggcactgtgatccag
gatgcagtggacatccactacccagtcaatgagatgacctgcaattccaaaatcagctgc
atcagctggagtagttatcacaagaacctcctggccagcagcgactatgagggtactgtc
attctgtgggatggattcaccggccagcggtccaaagtgtaccaggaacatgaaaaaagg
tgttggagtgtcgacttcaatctcatggaccccaaactcctagcttctggttctgatgat
gcgaaagtgaagctgtggtcaaccaaccttgacaactcagtagcgagcatcgaggccaag
gctaacgtttgttgtgttaaatttagcccaacttcaagatatcatctggcatttggttgt
gcagaccactgtgtccactactacgacctacgcaacacaaagcagccaatcatggtgttc
aagggccacaggaaggccgtgtcttatgccaagtttgtaaatggggaagaaattgtttcc
gcttcgacagacagtcagctgaagttgtggaacgtcaacaaacctcactgcctgcgctcg
ttcaagggccacatcaacgagaagaactttgttgggctggcatccaacggagactatgtc
gcatgtggaagtgagaacaactccctttacctatactacaaaggactttccaagacactg
ttaacgtttaagtttgacacagtgaagagtgtactggacaaggacaagaaggaagacgac
accaacgagtttgtcagtgccgtctgctggagggccatgcctgacggagagtcaaatgtt
ctcattgctgcaaacagtcaaggaacaatcaaggtacttgaacttgtctga

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