Cololabis saira (Pacific saury): 133454932
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Entry
133454932 CDS
T09849
Symbol
dhx29
Name
(RefSeq) ATP-dependent RNA helicase DHX29
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
csai03012
]
133454932 (dhx29)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133454932 (dhx29)
Translation factors [BR:
csai03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133454932 (dhx29)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_DHX29
OB_NTP_bind
Helicase_C
DEAD
HA2_C
DSRM_DHX29
HA2_N
AAA_22
nSTAND3
nSTAND1
AAA_16
Motif
Other DBs
NCBI-GeneID:
133454932
NCBI-ProteinID:
XP_061589655
LinkDB
All DBs
Position
11:complement(9574365..9597652)
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AA seq
1383 aa
AA seq
DB search
MGGKKKKPGSHAGAAGLVGPASACRSGAGAAEEEAKKQPASERPAKPARESKSKAPKTYS
LSNTAQADKGGVSEKSILKVFIQADLEKKIIKLINDFRQENGDKGPISGRLTSKKLLDLY
TALQKFNFKREHIEEAMKSSVLYGGDLHSALDWLCLNLKDEELPDGFSQQLQEEVQKSRP
KFQPPPQQKPVAPSPKTVNNTCRETSKTTEKDDADVKDWILRYAEQSSDDDDDEEEKEEQ
GKKTHNPEMEEKFDPNDRYLVLTAQLYDTKEMAATAKAKGDKAGQRMVQDRIRVIQQEMK
HLESHPVFNPAIKVVDAPRKEKKILPVGDDKEDLSFNLFERAEKEPPAEKVVKKNEPKDI
RNFDYTARSWTGKSPKQFLIDWVRKNLPKSPAPTFHKVAAGKYWRCKARVQRVDDFLEVC
PTIVTEDSMQAQHLAATLALYNLVKGQSVHQLLPPTYRDVWLEWRDGEQQRRDESRTAAN
KPRDQFISRLLTRLKQQQEVQGLGEQSGSERQETFGTDGGREEEPEESWENLAGLDIGER
GAEKEDRCEKRGGKRESAAGLEAARELFLKLRKSPLAHKLQAEREQLPVFQHRGRVMEAL
QRHPVVVVAGETGSGKSTQIPQFLLEEMLTGGKAAEPCNIVVTQPRRISAMSLASRVSQE
LGCESGPGTKSSLCGYQIRMENQSGEWTRLLYCTTGVLLRKLQNDRHLSSLTHIIVDEVH
ERSVQSDFLLTVLKDVVMKRSDLKLILMSATVDCNKFSNYFNRCPVINIPGRTFPVEVYH
LEDIVEQTGYVLEKDSEYCQKILEDEEEVSISVSQKGGKTSQHQEVIVRDSCSGWDLGPD
LDHFSSRTRQVLQYMNPNKINMDLLVDLVDYLDKSPQFASLDGAILVFLPGLAHIQQLYD
LVTSDKRFRDKNRYRVVALHSTLSSKDQASAFTVLPAGVRKIVLSTNIAETGVTIPDVVF
VIDTGKTKENKYHESSQMSSLVETFVSKASAFQRQGRAGRVRNGFCFRLYPKFRFDSFMD
FSVPEILRVPLEELCLHIMKCQYGSPEDFLSRALDAPQPQSVSNAVNLLRKIGACHPTSH
ALTPLGHHLASLPVNVKIGKMLVYGAILGCLEPIATIAAAITEKSPFSTPMNRKDEANLA
KAALATANSDHLTIYTAYLGWKNSQQDGQRAEVSYCRKYFLNRTALITIEDVKHGLMRMM
EQAGFWSSSSSSHSKQQATSLSKQQVTVLNAALTAGLYDSVARVLFTQSVDVLERIACTV
ETPQGKAQVHPSSVNRNLQTHGWLLYQEKVKYTKIYLRDTTLVSPFPMLLFGGDIDIQHR
EKLITLDGWISFQAPVRIGVIFKHLRKLMDSLLEKKLENPRTKLEGETTIQMILDLIKSE
HAV
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaaagaagaagaaaccaggcagccatgcgggtgcagccggcctggtcggcccg
gcttcagcctgcaggagcggcgccggcgcggcggaggaagaggcgaagaaacagccggcc
agcgagcgacccgcaaaaccagccagggagagcaagtctaaagctccgaagacttacagt
ctttccaatacggctcaggcggacaaaggtggggtctcagagaagtcaatccttaaagtg
tttatccaagcagacctggagaagaagatcatcaagttgatcaacgacttcagacaggag
aatggggacaaaggacccatatctggcagactcacaagcaagaaactactggacctgtac
accgctctacagaagttcaacttcaagagagaacacatcgaagaggcgatgaagagtagt
gtcctgtacggaggcgacctccactctgctctcgactggctctgcctcaacctcaaagat
gaggagttaccagatggtttcagccagcagctgcaggaggaggtccagaagagccggccc
aaattccagcctcctccccagcagaaacctgtagctccgagccccaaaacggtcaacaac
acttgcagagagaccagcaagactacagagaaagatgatgctgacgtgaaggactggatc
ttaaggtatgcagagcaaagcagtgatgatgatgatgatgaggaggagaaagaagaacag
gggaagaaaacacacaacccagaaatggaggaaaagttcgatccaaatgacaggtatttg
gtccttactgctcagctgtatgacactaaagaaatggcagccactgcgaaggccaaagga
gacaaggcgggtcagaggatggtgcaggacagaatacgggtcatacagcaagaaatgaaa
cacctggagtcccaccctgtgttcaatccagctataaaagtggtggatgcaccccgaaaa
gagaaaaagatacttcctgtcggcgacgacaaagaggacctcagcttcaatttgtttgaa
cgagcggagaaagaacctcctgcagagaaagtcgtgaaaaagaatgaaccaaaagacatc
cgcaactttgattacacggcacgcagctggacgggaaagtcccccaaacagttcctcatc
gactgggtccggaagaatctgcccaaaagtccagcgccaacttttcacaaggttgccgct
gggaaatactggcgatgcaaggcccgtgttcagagagtagatgattttttggaggtttgt
ccaaccatcgtgactgaagacagcatgcaggctcaacatctggctgccacactggccctc
tacaacctggtgaaaggacaatcggtgcaccagctcctacctcccacctacagagacgtc
tggctggagtggagagacggcgagcagcagcgacgggacgagagccggacggctgccaac
aaaccccgggaccagttcatctcccggctcttaaccaggctgaaacagcagcaggaggtt
cagggtctaggggagcagtccgggtcggaaaggcaggagacgtttgggacggacggggga
agggaagaggagcctgaggaatcctgggaaaatctggctggtcttgatattggggagaga
ggagcagaaaaggaggacaggtgtgagaagcgtggagggaaaagggaaagcgctgcgggg
cttgaagctgccagggagctctttctgaagctgaggaagtctccacttgctcacaaactg
caggcggagcgagagcagcttccagtctttcaacaccgaggtcgtgtcatggaggctttg
cagcgccaccctgtggtcgtggtggccggtgagacgggcagcggcaaaagcactcagatc
cctcagttcctcctggaggagatgctgactggagggaaagctgctgagccctgcaacatc
gtggtgacccagccacgcaggatatcggccatgagcttggccagcagagtcagccaggag
ctgggctgcgagagcggaccaggaaccaagtcttcgctgtgtggataccaaatccggatg
gagaatcagtctggcgaatggacccgcctgctgtattgcacgactggagtcctgctcagg
aagctccagaatgacagacacctaagctccctgacgcatatcattgtggacgaggtccac
gagcggagcgtccagtcagacttcctgctaaccgtcctcaaagacgtcgtaatgaagagg
tccgacctgaagctgatcctcatgagtgccacagtggactgcaacaagttctccaactac
ttcaaccgctgcccggtgatcaacataccaggccgaacgttcccagtggaggtgtatcat
ttagaggacatcgtggagcagacgggatacgttctggaaaaggactcggagtactgccag
aaaatcctggaagatgaagaagaggtctccatctctgtctcgcaaaaaggcggcaaaacc
tcgcagcaccaggaggtgatcgtgagggactcttgctctggctgggacctgggtcccgac
ctcgaccacttcagtagcaggactcgtcaggtgctgcagtatatgaaccctaataagatc
aacatggacttactcgttgacctcgtcgactacttagacaaatctccacagtttgcaagt
ttggacggagccatcctcgtgttcctccccggtctggctcacatccagcagctgtacgac
ctggtcacctcagataagaggttccgggacaagaacaggtacagagttgttgctcttcac
tccactctttcgtccaaggaccaggcctctgcgttcacagtgctccctgctggagttaga
aagattgtcttgtcaaccaacattgctgagacaggtgtgaccatacctgatgttgtgttc
gtcattgacactgggaagaccaaagaaaataagtaccacgagagcagccagatgagttct
ctggtggaaacgttcgtctctaaagccagcgccttccagagacaagggagagccggacgc
gtccgaaacggcttctgcttcagactttatcctaagttcaggttcgatagcttcatggac
ttctctgtcccagagatactgcgggtcccactggaggaactctgtcttcacatcatgaaa
tgtcagtacggctccccggaggactttctgagccgggcgctggatgctccccagccccag
tcggtcagtaacgccgtcaacctgctcaggaagatcggcgcgtgccatcccaccagtcac
gctctcacccctctgggacaccacctggcgagtcttccggtcaatgtgaaaatcggcaag
atgctcgtctacggagccatcctcggctgcctggagcccatcgcaaccattgcagcagcc
atcacagagaagtcgcctttctccacaccaatgaacagaaaggatgaagctaacctggcc
aaagctgcgctagcgacagccaactctgatcacctgaccatttacactgcatatctgggg
tggaaaaactcccagcaagatgggcagagagctgaggtgtcgtactgcaggaagtacttc
ctaaatcgaactgctctcatcacaatagaggatgtgaagcacggactgatgaggatgatg
gagcaggcaggcttctggtcctcctcttcctcgtctcactcgaagcagcaggcgacttcg
ctgtccaagcagcaggtcacggtgctgaacgcggctctgacggcaggcctctacgacagc
gtggcccgcgtcctgttcacacagtccgtggacgtgctggagcgaatcgcctgcacggta
gagacgcctcaaggaaaagctcaagttcacccttcatctgtgaaccgcaacctgcagacg
cacggctggcttttatatcaggagaaggtgaaatacaccaagatctacctgcgagacaca
actctggtatctcctttccccatgctgctgtttggaggcgacattgatattcagcacaga
gagaaactcatcaccttagatggatggatcagcttccaggcgccggtacggatcggtgtg
atcttcaaacatttgaggaaactgatggactctttgctggaaaagaagttggaaaacccc
agaaccaaacttgaaggtgaaacaaccatccagatgattctggatctgatcaaatcggag
catgctgtctaa
DBGET
integrated database retrieval system
