Cololabis saira (Pacific saury): 133455061
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Entry
133455061 CDS
T09849
Symbol
trim23
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM23
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133455061 (trim23)
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
csai04031
]
133455061 (trim23)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133455061 (trim23)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
133455061 (trim23)
GTP-binding proteins [BR:
csai04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
133455061 (trim23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
G-alpha
SRPRB
zf-RING_UBOX
zf-B_box
zf-RING_5
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
133455061
NCBI-ProteinID:
XP_061589873
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Position
11:complement(18327898..18336947)
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AA seq
580 aa
AA seq
DB search
MAAAAAGINKHGAAATMEPCLRHGRGSSGSTVKVLECGVCEDVFSLQGDKVPRLLLCGHT
VCHDCLTRLPLHGRAVRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGATNQSGIAE
DALKGMGECIIRCDEDENHTASMYCTVCATHLCAECSQLTHSTRTLAKHRRVPLADKPHE
KMLCPQHQVHAIEFVCLEEACQSGPLMCCVCKEYGKHQGHKHALLETEANHIRASILDMA
HCIRTFTEEVSEYSRKLVGIVQQIEGGEHIVEDGIGMAHTEHVPGTAESARSCVRAYFAD
LHETLCRQEEMALSVVDAHVRERLIWLRQQQEDMTILLSQVSTACLHCEKTLQQDDCRVV
LAKQEINCLLETLQKQQHQFTELADHIQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLDG
AGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQA
VVFVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVPGVVSVEEMTELLSLHK
LCCGRSWHIQGCDARSGMGLHEGLDWLSRQLVAAGVLDVA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgccgcagcaggaataaacaagcacggcgccgcagcgacgatggagccctgt
ctgcgccatggcagggggagcagtggcagcaccgtcaaggtgctggagtgcggcgtgtgc
gaagacgtgttctccctccagggcgacaaggttccccgtcttctcctctgcggccacacg
gtgtgccacgactgtctgacacggctgcccctccacggcagggctgtccgctgccccttc
gacagacaggtcaccgagctaggggactctggagtttggggtctcaagaagaacttcgct
ctgctggagctgttggagcgtctccagaacggagccaccaaccagtcgggaatagccgag
gatgccctgaaaggcatgggggaatgtataatccggtgcgacgaggacgagaatcacacg
gcctccatgtactgcaccgtgtgcgccacccacctgtgcgctgagtgctctcagctcacc
cactccactcgcacgctggccaaacaccgccgcgtccctttggctgataagcctcatgag
aagatgctctgtccacaacaccaggtccacgccatcgagtttgtgtgtctggaggaagcc
tgtcagtctggcccccttatgtgctgcgtgtgcaaagagtacggcaagcaccagggacat
aagcatgctcttcttgagactgaagccaatcatatccgtgcatccatcctggacatggcc
cactgcatccggaccttcacggaagaggtgtccgagtactcgaggaagctggtgggcatc
gtgcagcaaatagagggcggcgagcacatagtggaggacggcataggaatggcgcacacg
gaacacgtccctggaaccgcagagagcgcacgttcctgcgtccgagcttacttcgccgac
ctgcacgagactctgtgtcggcaggaggagatggcgctgagcgtggtggacgctcacgtc
cgggagaggctcatctggctgaggcagcagcaggaggacatgaccatcctgctgtctcag
gtctccactgcctgcctgcactgcgagaaaactcttcagcaggatgattgcagagtcgtc
ctggcgaagcaggagatcaactgtttgctggagacacttcagaagcagcagcaccagttc
accgagctggcggatcacattcagttggacgccggcatcccggtcaccttcactaaggac
aaccgggtccacattggtccgaagatggagatccgtgttgtgactcttgggcttgacggg
gctggaaaaaccaccatcctgttcaagctgaagcaggatgagttcatgcagcccatcccg
accattggttttaatgtggagacagtggaatataagaacttgaagttcactatctgggat
gttggtggaaagcataagctccggcctctctggaaacactattatctgaacacccaagcg
gtggtgtttgtgattgacagctgccacagggacagactcatggaggcccacagcgagctg
gctaaactactgactgagaaagagctgcgggacgccctgttgctcatctttgcaaacaag
caggacgttcctggcgtcgtgtccgtggaggagatgacagaactgctgagcctgcacaag
ctgtgctgtgggaggagctggcacattcaaggctgcgatgcccgcagcgggatgggcctc
catgaggggctggattggctctccagacagctggtggccgctggggtcctggatgtggcg
taa
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