Cololabis saira (Pacific saury): 133455109
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Entry
133455109 CDS
T09849
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csai03009
]
133455109 (ddx55)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133455109 (ddx55)
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
Pre-60S particles
Helicases
133455109 (ddx55)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
Cas3-like_C_2
EME1-MUS81_C
YbjM
AAA_22
Motif
Other DBs
NCBI-GeneID:
133455109
NCBI-ProteinID:
XP_061589964
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Position
11:complement(21325568..21333356)
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AA seq
595 aa
AA seq
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MDVVRESAWSSLSVKLHQNILQTLEEIKFTDMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPVIELLLKREEKLKKMQVGALVITPTRELALQISEVMDMFLQKFPQFTQILLIGG
SNPAEDVEKFKDQGANIVIATPGRLEDMFRRKSEGLDLASAVRSLDVLVLDEADRLLDMG
FEASLNTILSHLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKERGVASAVAAVQKT
PSRLSNYYTMCRAEEKFNILVAFLRQHKHEKLLVFFSTCACVEFYGRALEVLVKKVTVHC
IHGKMKNRRNSIFAEFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGR
TARIGNYGDALVFLLPMEESYVNFLSINQKCPLQKMALIKDVVDVLPKVKALALADRAMF
DRGMRAFVSYVQAYAKHECSLIFRVKDLDYASLARGFALLRLPKMPELRGKTFAEFTETT
LDTDTIRYKDKHREKQRQKMLAELRERDPTPRRRFVKNKAWSKQKTRKDRRKKAAAKRKH
NEGSDVDDEDMKELLNDTRLLKKLKKGHITEEDFEQQITSKPKTNPLKTEMNSDI
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggtcagggagagcgcgtggagtagtttatctgttaaacttcaccagaatatt
cttcaaaccctcgaagagatcaagttcactgacatgacacctgtgcagtccgcgtgtatt
ccgctgttcatgagcaacaaggatgtggctgctgaggcggtgaccggaagtggaaaaaca
ctcgcctttgtcattcctgtcatcgagctgctcctgaagcgagaggagaaactaaagaag
atgcaggtcggcgctctggtgatcactcccaccagagaactggctctccaaatcagtgaa
gtgatggacatgttcctccagaagtttccacagtttacgcagatcttattgattggaggc
agtaacccggcagaggatgtggagaagttcaaggatcaaggggcaaacattgtcatcgcg
acgcccggccgcctggaggacatgttcaggaggaagtcggagggtctggacttggccagc
gccgtcaggagtctggatgttctggttctcgacgaggccgacagactcctcgacatggga
ttcgaggccagtctgaacaccatcctaagccacctgcccaaacagagacggacaggtctg
ttttcagccactcagactcaggagctggagaagctggtgagggccggcctcaggaaccct
gtacgcatcacagtcaaagagaggggcgtggccagtgccgtcgccgctgtgcagaagacc
ccgtccaggctgtccaactactacactatgtgtagagcggaggagaagttcaacatcctg
gtggcctttctaaggcaacacaagcatgagaaactcctggttttcttcagcacctgcgct
tgtgtggagttctatggccgagctctggaggtgctggtgaagaaagtcacggtccactgc
attcacggcaagatgaagaacagacgcaacagcatcttcgcagaatttcgggcgctgaag
agcgggatcttggtgtgcaccgacgtcatggccagaggcatcgacatccccgacgtgaac
tgggttctgcagtatgaccctcccagcagcgccagcgcctttgtgcaccgatgtgggcgg
acagcacggatcggtaactatggcgacgcccttgtgtttctgctgccgatggaggagtct
tacgtcaatttcctgtccatcaaccagaagtgtccgctccagaagatggcgttgataaag
gatgtggtggacgtgctgcccaaagtaaaggccctggctctggcggaccgggccatgttc
gacagaggcatgagggccttcgtctcgtatgtgcaggcctatgccaaacatgagtgtagc
ctcatcttcagagtcaaagacctggactacgcttcactggctcgcggcttcgcgctcctc
cgcctgccgaagatgcctgagctgagggggaagacgtttgcagagttcacggagacgaca
ctggacacggacaccatccgttacaaggacaagcacagggagaagcagaggcagaagatg
ctggccgagctcagagaaagggacccgacacccaggaggcgctttgtgaagaataaggcc
tggtccaaacagaagaccaggaaggaccgccggaaaaaggcggcagccaagcggaagcac
aatgagggctctgacgtggacgatgaagatatgaaggagctgttgaacgacactcgcctc
ctcaagaagctaaagaaaggtcacataactgaagaagactttgagcagcagatcacaagc
aaaccaaagacaaacccactcaagacagagatgaactctgatatttaa
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