Cololabis saira (Pacific saury): 133455228
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Entry
133455228 CDS
T09849
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133455228 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
csai04990
]
133455228 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
csai04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
133455228 (pdlim5b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
DUF3854
Motif
Other DBs
NCBI-GeneID:
133455228
NCBI-ProteinID:
XP_061590146
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Position
11:complement(25520300..25556426)
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AA seq
613 aa
AA seq
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MSSSYSVSLAAPAPWGFRLQGGKDFCLPLTISRLTEGGKAARAKMSVGDIILSINGISTE
SMNHLEAQNKIKACMDQLSLTLQRPPTIATDEVHKDAPQEIIKPVPITHPAPSTAYTKPL
SQPTPAYNKTARPFGGGSGGVVTSSSPASSKVASIPSESSAFTPAAPSQPPQPPFPLKSS
VTPDSAPVNSVPKTSPGRSAFTSPSASSSSSNSSSPARVTAPSSNSNVPQSSVYNTPIQL
YSNANACEVAMGQRRGLLESQGLSEHINGKPAVEPENSASPLSDSSKKRLIEDTEDWHPR
TGTSQSRSFRILAQMTGTENEQNLENSGKSEPVVKTTPTIHTSSAAKTYSKSAAAPRNGN
VVPASTFKSPAAQNKASFPPGGLSGLPKVGPTPSFGKVANPASKGPDRPTPQPHPEDLNS
LVQRAEHIPAGTRTPMCCKCNNVIRGPFLVAMGMSWHPEEFNCAHCHSSLTECGFVEEKD
QVYCVRCYEQFFAPTCARCNQKVLGEVMNALKQSWHVSCFVCASCQQPIRGNTFHMEDGQ
PYCEKDYYSLFGTNCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSATLEGQAFFSKKD
KALCKKHAHTVNI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagcgtctctctggcagccccagccccatggggcttcagactgcaa
ggagggaaggacttttgtctgcccctcaccatctcacggctgacagagggaggcaaggca
gccagagccaagatgagtgtcggcgacatcatcctgtctattaatggcatttctacagaa
agcatgaatcatcttgaggcccagaacaagattaaagcctgcatggaccaactcagtctc
actctgcagagacctccgaccatcgctaccgatgaagtgcacaaggatgcacctcaagag
atcattaagcctgtgccaatcactcaccccgcgccgagcaccgcatacaccaagccacta
agtcagcccactcctgcatacaacaagacagctcggccgtttggagggggcagcggtggg
gtggtcacctcttcttccccagcttcttccaaagttgcctccatcccctccgagtcatcg
gcgtttacaccggctgccccctctcagcccccgcagcctccatttccgctgaagtccagc
gtcaccccagattcggctccagtaaattcagtccccaaaaccagccccggtcgctctgct
ttcacctcaccgtctgcctcttcctcctcatctaactcctcgtctccagccagagtgaca
gccccctcttccaattctaacgtcccacagtcttccgtctataacacacctatccagcta
tactccaacgccaatgcttgtgaagtggctatgggacagaggcgaggtcttttggagagt
cagggactgtcagagcatatcaatgggaaacccgccgtggagcctgagaatagtgcatcc
cctctgagcgattccagcaagaagcgtctgattgaggacacggaggactggcacccgcga
accggaacctcacagtctcgctcctttcgtatcctggctcagatgactggcacggaaaat
gagcaaaatcttgagaacagtggaaagagtgagccggttgtcaaaaccacccccaccatc
cacacatcatctgcagccaaaacatattccaaaagtgccgcagcgcccagaaatggcaat
gttgttcctgcttcaacatttaagagccctgcagcacagaacaaagcatccttcccccct
ggaggtctctcaggtcttcctaaggttggtccaaccccttcatttggcaaagttgccaat
cctgcttcaaaaggtccggaccgccccactccacagccacatcccgaggacctcaactct
ctggtgcagcgggctgagcacatcccagctggtacacgcacgccaatgtgctgcaagtgc
aacaacgtcatcaggggtcctttccttgtggccatgggcatgtcatggcaccctgaggaa
ttcaactgtgctcactgccactcctccctgaccgagtgtggatttgtggaggagaaggac
caggtgtattgtgtgcgttgctacgagcagttctttgctcccacctgtgcccgctgcaac
cagaaggttctcggggaagtcatgaatgccctgaaacagagctggcacgtgtcctgcttc
gtctgcgcttcctgccagcagccaatcaggggcaacacgtttcacatggaggatggacag
ccatactgtgaaaaagactactactccctgtttgggaccaactgccatggctgcgacttc
cccatcgaggcgggggataagttcctggaggccctggggttcacctggcatgacacctgt
tttgtgtgtgcggtctgctctgcaactctggaaggccaggcattcttctccaaaaaagac
aaggctttgtgcaagaaacatgcccacactgtcaacatctga
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