Cololabis saira (Pacific saury): 133456454
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Entry
133456454 CDS
T09849
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133456454 (ddx20)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133456454 (ddx20)
Spliceosome [BR:
csai03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
133456454 (ddx20)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
133456454
NCBI-ProteinID:
XP_061590914
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All DBs
Position
12:22436425..22445456
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AA seq
769 aa
AA seq
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MASSRSKTAHDIETRTRTDDVLPSEGIDFSSLLLSQAVLDGLSCSGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENSATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKFHLKKCHIAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMNEPTFVRLNPSDMGLKG
LKQYYKLVHSHPLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
SVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLNLSALPSTLQPSLMDEPCDWDVCT
EASTPASVSQLLSRTEKKHAKTRVPVSHPKVEQAAKHKSQRKPEKPCPGPEKGLHTEENV
RHTPAKGEHVALQKPTRKELQDALPKIPPLSSFKKCAPRFMSFGEAERDFQAFMTTGLGR
SVEIIREFRGKEDGENHRESVILHEDEEENVTQTCDWFKSNSSPQRSACGSSGSLSDMEE
DATLGGSDQTKVVEKEAITKLQTETTTTVQNPPAPTTYDQDSSSTSDRGLFHSESSESVA
STEASGQTNQTAPAKTYRDESKKMKKNKKLSKKMKHDPKIERDEEGCMDTEDECSSEAYW
RACYRAWDDYYTSMSHFQGQGYQGYYDLAHNWMAAYRMNAVYMQELLKH
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctccaggagcaagacagcccacgacatcgagacgcggactcggacggacgat
gtgcttccgtcggaggggatcgacttcagctcgctgctgctgtcgcaggccgtgctggac
ggcctgtcctgctcgggcttccagaagccgtctccgatccagctgaaggcgatcccgctg
ggccgctgcgggctggatttgattgtacaagccaagtccggcacgggaaagacgtgtgtg
ttctgtaccatcgcccttgactctctggttttggagaattcagctactcaggttcttgtt
ttggctcccacacgtgaaatagccgtgcagatccactcagtggtgatggccatcggctgt
gccatggagggtctggagtgccacgtgttcatcgggggcagaccagtgagtcaagacaaa
ttccacctgaagaagtgccacatagctgtgggctcaccaggtcgcatcaagcagctgatt
gagctgggcatgttgtccaccgccagcatcagactgtttgtcctggacgaggcagacaaa
ctgctggaggagggcagttttcaggaccagatcaactggatcttttcctctctgcctgtc
aacaaacagatgcttgccctctctgccacctacccagaaagccttgctcaacacctcacg
cgctacatgaacgagcccacttttgttagactcaatccaagcgacatgggcctgaaaggt
ctgaagcagtattacaagctggtgcattcccatccactccctcacaaggtctttgaggag
aaggtgcagcatttactcgagctgttcagtaaaatccccttcaatcaagccttggttttt
tccaacctgcacacaagagctcagcacctggcagacatcctgtcctccaaaggcttaccc
tctgtttgtatatcaggtggcctgagtcaggatcagagactggaggcgatgtcaaaactg
aagcagtaccagtgcagggttctcatctccactgacctgacttccaggggtatcgatgca
gagaaagtcaacctagtgataaatctggacgtgccgcaagactgggaaacctatatgcac
aggattggacgggccggacgtttcggcactcaggggttggctgtgacctactgttgccat
ggtgaggaagagaacaagatgatggccatcgctcagaagtgtggcctcaatttgtctgct
ctgccttccaccttacagcctagcctgatggatgagccatgtgactgggatgtctgcaca
gaggcctcgactccagcctctgtatcccagctgttgtccagaaccgaaaagaagcatgca
aagaccagagtccctgtgtctcatcccaaagtggagcaggctgcaaagcacaaaagtcaa
aggaagccagaaaaaccctgccctggacctgagaaaggactacacactgaagaaaatgta
aggcatacacctgccaaaggagaacacgtagcgctgcagaagccaactcgaaaagagctg
caagatgccctgccaaagattcctcctctcagctcgttcaagaaatgtgcgccaaggttt
atgagctttggcgaagcagagcgagacttccaggcgttcatgaccacagggttagggagg
tcggtggagatcatccgggagttcaggggcaaagaagatggtgaaaatcacagagaatct
gtcatacttcatgaagacgaagaggaaaatgtaacacaaacttgtgattggttcaaatct
aactcttcacctcagaggtcagcctgtggttcctctggttccctctccgatatggaagaa
gatgcgactttgggaggctcagatcagactaaggtagttgaaaaggaggctatcactaaa
cttcagactgaaaccacaaccacagtgcagaacccccctgcacccactacatatgaccag
gattcctcttcaacaagtgacagaggtttgtttcactctgagagcagtgaatcggtggca
agcactgaagcaagcgggcaaaccaatcagacagctccagcgaagacttacagagatgaa
tcaaaaaagatgaaaaagaataaaaagctctcaaagaagatgaaacacgatccaaagata
gaaagggatgaagaaggctgcatggacacagaggacgagtgtagctctgaggcgtactgg
agagcctgctacagagcctgggacgattattacacttctatgtcgcactttcaagggcaa
ggataccaaggctattatgatttagctcacaactggatggcagcttatcgcatgaatgca
gtctacatgcaggaacttctgaaacactga
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