Cololabis saira (Pacific saury): 133456635
Help
Entry
133456635 CDS
T09849
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a isoform X1
KO
K05636
laminin, beta 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04510
Focal adhesion
csai04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133456635 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133456635 (lamb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Laminin_II
Alanine_zipper
DIP0205-like_N
Motif
Other DBs
NCBI-GeneID:
133456635
NCBI-ProteinID:
XP_061591132
LinkDB
All DBs
Position
12:1608864..1685951
Genome browser
AA seq
1821 aa
AA seq
DB search
MLLLRVALLLALQALACAEEGGASVDQVLDEAGASVDQVLDEGGASEDQVLGEDLSLPEF
SDLCTEGSCYPNTGDLLIGRAHQLSSTSTCGLNRPDPFCIVSHLQDEKKCFVCDSSALYD
KLANQTTSHRIENVVTTFAPNRLKTWWQSENGQENVTIQLNLEAEFHFTHLIMTFKTFRP
AAMVIERSADFGKTWQVYRYFAYDCESSYPSVSQGPMKKVDDVICDSRYSDIEPSSEGEV
IYRVLDPAFRIDDPYSPRIQNLLKITNLRVKFTKLHTLGDNLLDSRVEIREKYYYAVYDM
VVRGNCFCYGHASECAPVRGGGQTWEGMVHGHCMCNHNTQGLNCERCQDFYQDLPWRPAE
GRNTNACKRCNCNQHSDSCHFDMAVFRASGNTSGGVCDDCQHHTSGRSCQQCQPFYFQHP
ERDVRDPNICQPCDCDPLGSVNGGICDGLTDVGAGLIAGQCRCKANVEGDRCQRCRPAHY
GLGDGPQGCTACTCSPLGTALGGNPCDSETGSCFCKRLVTGRDCDQCVPEHWGLSNDVDG
CRPCDCDLGGAIDNTCDQVSGQCRCRGHMFGRRCDQVESGFYFTALDHYTYEAEDADFGP
GVQLVQRSHPEDRGPTWTGTGLVSVPEGAFLEFSVDNIPHSMEYSILVRYEPQLPDLWEE
VLMTVMRPGPIRTDSRCVNTVPDDDHQMTSLHPGSRYVVLPRPVCLESGLNYTIRLSLLL
YSAGSDIQSPYTLVDSIVLMPHCKNLDIFSASVGGESSGSRAWETFQRYRCMENSQGVVK
TPMTDICRNFIFSISALLHQGAKECRCDPQGSLSSVCDPSGGQCPCRPNVVGRTCHACAP
ATFQFGPSGCRACACSAAGSQTRFCDQRTGQCPCVAGATGRQCERCLPGHWGFPGCRACS
CNGHAEACDPDTGRCRACRDHTEGHTCNRCVDGYYGDPVLGSGDHCRPCLCPDGPETPRQ
FAGRCYRSDDSQQVVCVCNTGHKGPHCDECSPGYYGNPSEAGGQCTPCQCNNNLDLLDPL
SCDARTGECQRCLHHTEGPACQSCALGYYGNALLQDCRKCVCDELGSEVSSCPAPGDCHC
DRVSGQCPCRSNVIGQTCDRCAPDTWNMASGDGCQRCDCDTQHSYGMSCDQVGGQCSCHP
GFGGRTCSECRELFWGDPEVRCHACDCDPRGISDPQCHKATGHCVCVDGVAGQRCDACAR
GFSGNFPDCVPCHQCFAEWDNVIGQLTNQTHRLVNKVNAFKASGVGGPYKKSMDSIERSA
AEVQLILDQNPAAEPLSEVQHLLQQASDLMGALSQSLNHTEQKLLEVEGQDTAAETKLDS
VASDAQKLERTIQDLLDQVESIKNSDIRGATASVTKYFLQSQTAEARANASTSGADSLVE
NSSGLRRLTEDKLNQTRAEFLSRHSEHAQRLDDLAGELQTLDLSQISQQVCGSPSSGQDS
CWSSCGGLGCSDSEGPARCGGPGCDGAVTTASDILKKAQESQQEITNAMEQVEKLSKMVS
EAKLQANEAKLSAQNVLMKTNRTKQKVDRSNEELRDLIRRIKDFLTQDAADLESIELVAT
EVLAMQMPTTPAQLQTLTNEIRQKVQELGHVETILQQSADNIQQAENLLDQAQRAREEVA
DVKDSAEKVKKALEEAQKIQTSATSSIQQATADIQNTNNLLSSVQSETTDSELKFRNATE
RLQRIEHDVLLLRNKAVNVSASTKVLSADAESIRNMTEDINRELESDVKQKYSNVEQLIG
QKAGGVADAKKRAESLQKEAKQLLLQANEKLHLLKDLEKSYEDNQRSLEVKAEQLVQLEA
SVKELLKDISHKVTIYSTCLF
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgctccgggttgcgctgctgctcgctctgcaggcgttggcctgcgcggaggag
ggcggggcctccgtggaccaggtcctggatgaggccggggcctccgtggaccaggtcctg
gatgagggcggggcctcagaggaccaggtcctgggtgaggatctcagcctccctgagttc
agtgacctgtgcaccgaaggcagctgttacccgaacacaggagaccttctgattggccga
gcccaccagctgtcttctacgtccacctgtggactgaaccgccccgacccgttctgcatc
gtcagtcacctgcaggatgagaagaagtgcttcgtctgtgactcttcagcgctttacgac
aagctggccaaccagaccaccagccatcgcatcgagaacgtggtcaccaccttcgccccg
aaccgactcaagacctggtggcagtccgagaacggtcaggagaacgtcaccatccagctg
aacctggaggcggagtttcacttcacacacctcatcatgaccttcaagacgtttcgcccg
gcggccatggtgatcgagcggtcggcggacttcgggaagacgtggcaggtgtatcgctac
tttgcctacgactgcgagtcgtcctacccttcggtctctcagggtcccatgaagaaggtt
gatgatgtcatctgcgactcccgttactccgacattgagccgtccagcgaaggagaggtt
atctacagagttctggacccggcgtttcggatcgacgacccctacagtccacgaatccag
aacctgctgaagatcaccaacctgcgggtgaagttcaccaagctgcacacgctgggagac
aacctgctggactcccgggtggagatccgggagaagtactactacgccgtctacgacatg
gtggtccgcgggaactgcttctgctacggccacgcctccgagtgcgcccctgtccggggg
gggggtcagacctgggagggcatggttcatggtcactgcatgtgcaaccacaacacccag
ggcctgaactgtgaacggtgccaggacttctaccaggacctgccctggaggccagccgag
ggccgcaacaccaacgcctgcaagaggtgtaactgcaaccagcactcggactcgtgccac
ttcgacatggccgtgttcagggcgtctggaaacaccagcggaggagtctgtgacgactgc
caacaccacacgtctggacggagctgccagcagtgccagcctttctacttccagcacccc
gagagagacgtccgggaccccaacatctgccagccctgcgactgcgacccgctgggctcg
gtgaacggagggatctgcgacgggctgacggacgtcggtgccgggctgatcgcgggtcag
tgccgctgcaaagctaacgtggagggagaccgatgccagcgctgccggccggcccactac
ggcctcggagacgggccccagggctgcacagcgtgcacctgcagcccgctgggcacggct
cttggaggaaacccctgcgactctgaaacaggaagttgcttctgcaagcggctggtgacg
ggacgggactgtgaccagtgtgtgcctgaacactggggtctcagtaacgacgtcgacggc
tgcagaccatgtgactgcgatctgggcggagccatcgacaacacgtgtgaccaggtgagc
ggccagtgcaggtgcagaggccacatgttcggccggcgctgtgaccaggtggagtcaggg
ttctacttcacggctctggaccactacacctacgaagccgaggacgccgacttcggaccc
ggggtccagctggtccagaggtcccaccctgaggaccggggtcccacgtggactggcacc
ggcctggtcagcgtcccagagggggccttcctggagttctcggtggacaacatccctcac
tccatggagtacagcatcctggtccgctacgagcctcagctgccagacctatgggaggag
gtcctgatgacagtgatgaggcccggacccatcagaaccgacagccgctgcgtcaacacg
gttcccgacgatgaccaccagatgacctcgctccaccccggctcacggtacgtggttctg
ccgcggcccgtctgcttggagtctggtctgaactacaccatccgcctgagtctgctgctg
tactccgccggcagcgacatccagtccccatacaccctggtggactcgatcgtgttgatg
cctcactgtaagaacctggacatcttctcggcatcggtgggaggggaatcgagcgggagc
cgcgcctgggaaacgttccagcggtacaggtgcatggagaacagccagggggtggtgaaa
acgcccatgacggatatctgcaggaacttcatcttcagcatctctgccctgctgcaccag
ggagccaaagaatgccgctgtgacccccagggctccctgagcagcgtgtgcgaccccagc
gggggccagtgtccctgccggcccaacgtggtgggcaggacctgccacgcttgtgctccg
gccaccttccagttcggacccagcggctgccgagcctgcgcctgcagcgccgccggctcc
cagacccggttctgcgaccagcggaccgggcagtgcccctgtgttgccggggcgacgggt
cgccagtgtgaacgctgcctgccgggtcactggggcttccccggctgccgggcctgctcc
tgcaacggccacgccgaggcctgcgaccccgacacgggccgctgccgggcctgcagggat
cacacggagggacacacctgcaacaggtgcgtggatggttactatggcgaccccgtgctg
gggtcaggtgaccactgtcgcccctgcttgtgtcccgacggcccagagaccccgcggcag
ttcgcagggaggtgttaccgtagcgacgactcgcagcaggtcgtctgcgtctgcaacacg
ggacacaaaggtcctcattgtgatgagtgctcccccggttactatggaaacccctctgag
gcgggggggcagtgcacgccgtgtcagtgcaacaataacctggacctgctggacccgctg
tcctgcgacgcccggaccggcgagtgtcagcgctgcctccaccacaccgagggtcccgcc
tgccagagctgcgcactgggttactacggcaacgccctgctgcaggactgcaggaagtgt
gtgtgtgacgagctcggcagcgaggtgtccagctgcccggcgcccggcgactgtcactgc
gatcgtgtcagcggccagtgtccctgccggagcaacgtgattggtcagacctgcgaccgc
tgcgcacccgacacctggaacatggcgagtggcgacggctgccagcgctgcgactgcgac
acccaacactcttacgggatgtcctgcgaccaggtcgggggtcagtgttcctgccatccc
gggttcggaggaagaacctgcagcgaatgcagagagctgttctggggcgacccggaggtc
cggtgtcacgcctgcgactgcgacccccggggcatctccgacccgcagtgccacaaggcc
accggtcactgcgtctgcgtggacggcgtggcgggacagcgctgtgacgcctgcgctcga
gggttttcaggaaacttcccagactgcgtcccgtgtcaccagtgttttgcagagtgggac
aacgtcatcggtcagctgaccaaccagacgcaccgactggtcaacaaggtcaacgccttc
aaggccagtggcgtcggggggccgtacaagaagtccatggactccatagagagaagtgct
gctgaagtccagctgatcctggaccagaacccggccgcagaaccgctgagcgaggtccag
cacctgctgcagcaggccagtgacctgatgggagccctgagccagagcttgaaccacact
gagcagaagctgctggaggtggagggacaggacactgctgcagaaaccaaactggactct
gttgcctcagatgcccagaaactggagagaacgatccaggatctgctggatcaggtggag
tcaatcaagaactccgacatcagaggagccaccgccagcgtcaccaagtacttcctgcag
tcccagacggctgaagcccgagccaacgcctccaccagcggggctgacagtctggtggaa
aactccagcggtctacggaggctgacggaggacaaactgaaccagaccagagcggagttc
ctgagcagacactctgagcatgctcagaggttagacgacctggcaggagagctgcagact
ctggacctgtcccagatcagccagcaggtttgtggcagtccttcctctggacaggactcc
tgctggtcttcgtgtggaggtctgggctgctcggactctgaaggaccagcccggtgtgga
ggaccagggtgtgacggtgccgtaaccacagccagcgacatcctgaagaaggctcaagag
tcccaacaagaaatcaccaacgccatggagcaggtggagaagctctccaagatggtatca
gaggccaaactgcaggcgaatgaagccaaactcagtgctcagaacgtcctgatgaagacg
aacagaaccaaacagaaggtggaccggagcaacgaggagctgcgagacctcatcagacgg
atcaaggacttcctcacacaggatgctgcagacctggagagcatcgagctcgtggccact
gaagtcctggccatgcagatgccgaccacgccggctcagctgcagactctgaccaacgag
atccggcagaaggtgcaggagctgggacacgtggagaccatcctgcagcagagtgctgac
aacatccagcaagctgagaacctgctggaccaggcccagcgagcccgggaggaagtggct
gatgtgaaggactctgcagagaaagtgaagaaggctctggaagaagctcagaaaatccag
acatctgccacgagctccatccagcaggccacggccgacatccagaacaccaacaacctg
ctgtcttcggtgcagtcggagacaacggactcggagctgaagttcagaaatgcaacggag
agattgcagaggatcgagcacgacgttctgctgctcagaaacaaagctgtgaacgtcagt
gcgagcactaaagtgctcagtgcagatgcagaaagcatcagaaacatgacggaggacatc
aaccgggagctggagtcagatgtgaagcagaagtacagtaatgtggagcagctgattgga
cagaaggcagggggcgtggctgacgctaagaagagggcggagtcgctgcagaaggaagcc
aaacagctgctgctgcaggccaatgagaagctgcacctgctcaaagacctagagaaatcc
tatgaagacaaccagcggagtctggaggtgaaggcggagcagctggtgcagctggaggcc
tcggtcaaggagctgctgaaggacatcagccacaaggtcaccatctacagcacctgcctg
ttctag
DBGET
integrated database retrieval system
