Cololabis saira (Pacific saury): 133456641
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Entry
133456641 CDS
T09849
Symbol
sox18
Name
(RefSeq) lateral signaling target protein 2 homolog
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133456641 (sox18)
Transcription factors [BR:
csai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133456641 (sox18)
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Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
133456641
NCBI-ProteinID:
XP_061591138
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Position
12:2208350..2217091
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AA seq
585 aa
AA seq
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MNLKEPCLPSEASLHAGQMPLGGPWTSETPSPTSDPEMGFEQSLSGDCSSPDVLGTGNMG
RAEPSIALTASSVGQGPELNHGGGVSSGDGKTAGAEQRIRRPMNAFMVWAKDERKRLALQ
NPDLHNAVLSKMLGQSWKALSATDKRPFVEEAERLRVQHLQDHPNYKYRPRRKKTTKKLK
RVEPGILLHSLAQRGTTGLGLGSGVSSMGTEGSAYGHPCTHPPHHHHPHQVLPSLGHFRD
LQVPGHRELESYGLPTPEMSPLDVFEEGAGESVFFPQHIQEETGIGGWNGYQRHLHHHNQ
HYSHHYTNHGPHTSIHGQGSGMSMSANLNSINSSLSPSRSSRLDSRMSSVESNMTSNMNS
TSKLHPSLTSCQQIPLRISVKCPPPQPDSSSAVPFTHPSISLPEPVKCQQTTLSTAPVNY
FSPMYGSDTLGAIHFVSSHLGQLSPPPETPPSSCLSSCVPPPSTFLRSSHLEHSNLEATG
HMGSTSAEFWSEVDRHEFNQYENVGRNQEEAYGLGGGCGGRSKLQGGCTTICGGSSNNGI
VSNVMNKDISSIMSGVGGCDNGSSPLISALSDASSAVYYSACITG
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgaaggagccctgcttgcccagcgaggcttctctgcacgccggccagatgcct
ctcggaggcccctggacttcagagaccccgagtcctacctccgatcctgagatgggtttt
gagcagagcctctctggagactgcagttctcctgacgtcctgggaacggggaacatgggg
agagcagaaccgagtatcgctttaacggccagttccgtgggacaaggtccggagctgaac
cacggaggaggtgtgtcgtcaggtgatgggaaaaccgcgggggcagagcagaggatccgc
aggcccatgaatgccttcatggtctgggccaaagacgagaggaagcgactagctctacag
aaccctgacctacacaacgctgtgctcagcaagatgcttggtcagtcatggaaggccttg
agtgccacagacaagcgaccatttgtggaagaggcagaacgtctccgcgtccaacatctc
caggatcacccaaactacaaatacaggccacgccgcaaaaagaccaccaaaaagctgaag
cgggtagaaccagggatcctgctgcacagcttagcccagagaggaaccacaggtcttggt
ttgggttctggtgttagctctatgggtacagaaggatctgcttatggacatccatgcact
caccctccacaccatcatcatccccaccaagtgctgccatctttgggacacttcagggac
ctccaggtcccagggcaccgagaactagagagctatggtttgccgactccagagatgtcc
cctctggatgtttttgaagaaggagctggagaatcggtgtttttccctcaacatattcaa
gaagagactggaataggaggttggaatgggtaccaacgccaccttcaccatcacaaccaa
cattacagccatcactacaccaaccacggtccccacacatctatacacggccagggttct
ggaatgagtatgagtgccaatttaaacagtataaattcaagtcttagtccaagtagaagt
tcaagacttgattcgagaatgagttctgttgaatcaaatatgacttcaaacatgaactcc
acctcaaagttacatccttctcttacttcttgtcaacaaattcctttaaggatttctgtg
aagtgtccaccacctcagcctgactcctcttctgctgtgcccttcacccatccctccatt
agcctccctgagccagtaaaatgccagcaaacaactttgagcacggctcccgtcaactac
ttcagcccaatgtatggaagtgacaccctaggtgccatccatttcgtttcctcccatcta
ggccagctgtcacctcctcctgaaactccaccctcttcttgcttgtcatcttgtgttcct
cctccatcaaccttccttcgctccagccatttagaacattcaaatcttgaggccactggc
cacatgggctctacttctgctgagttttggtctgaagtggacagacatgaatttaatcag
tatgaaaatgtgggaagaaatcaagaggaagcctatggacttggtgggggatgtggaggc
agatcaaaacttcaaggtggttgcacaaccatttgtggaggtagcagcaataatggcatt
gttagcaatgtaatgaacaaggacattagcagtattatgagtggtgttgggggctgtgat
aatgggagcagccccctcatatctgccctttctgatgccagtagtgctgtatattacagt
gcctgtatcactggataa
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