KEGG   Cololabis saira (Pacific saury): 133457954
Entry
133457954         CDS       T09849                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03030  DNA replication
csai03410  Base excision repair
csai03420  Nucleotide excision repair
csai03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    133457954 (rfc4)
   03410 Base excision repair
    133457954 (rfc4)
   03420 Nucleotide excision repair
    133457954 (rfc4)
   03430 Mismatch repair
    133457954 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csai03032]
    133457954 (rfc4)
   03036 Chromosome and associated proteins [BR:csai03036]
    133457954 (rfc4)
   03400 DNA repair and recombination proteins [BR:csai03400]
    133457954 (rfc4)
DNA replication proteins [BR:csai03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    133457954 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    133457954 (rfc4)
Chromosome and associated proteins [BR:csai03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    133457954 (rfc4)
DNA repair and recombination proteins [BR:csai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     133457954 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    133457954 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_assoc_2 AAA_22 AAA_16 DUF815 AAA_11 AAA_30 AAA_14 Mg_chelatase RuvB_N Gp44_lid AAA_24 AAA_19 SLFN-g3_helicase ResIII AAA_5 DNAX_ATPase_lid AAA_7 Kinesin bpMoxR
Other DBs
NCBI-GeneID: 133457954
NCBI-ProteinID: XP_061593334
LinkDB
Position
13:1639530..1675014
AA seq 356 aa
MQAFLKGATAPVSRAPRDKAAAASSEKKAKAVPWVEKYRPKCIDEVAFQEEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAAAKELYGPQLYRQRVLELNASDERGIQVIREKVKNF
AQLTVSGTRPDGKPCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYISRI
IEPLTSRCSKFRFKPLANQIQEERLLEICEKEKLQYTEESIAALVQVSEGDLRKAITFLQ
SVARLSGNKEITVGAVVEIAGVVPSPMIHSLLQICFRGTFENLEVVLKNTVDEGYAATQI
LNQLLDSIIEQDLPDKNKSAITEKMAVVSKCLSDGADEYLQMLSLCSVIMQQASQA
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgcaggcctttctgaaaggagcaaccgctccagtgagcagagctccgagggacaaggca
gcagcagccagctccgaaaaaaaagccaaggctgttccctgggtggaaaaatatagacca
aaatgtattgatgaggtggccttccaggaggaggttgtagcggttctgaagaaatctttg
gaaggagctgatcttcccaacctgctcttctacggtcctcctggaacaggaaagacgtcc
accatcttagctgctgccaaagaactttatggtcctcagctgtacagacagagggtgttg
gagctgaatgcttccgatgaaagaggcatccaggtcatccgggagaaagtcaagaacttt
gctcagctcacggtgtccgggactcgtcctgacgggaagccgtgtcctccgtttaagatc
atcatcctggacgaagccgactccatgacggggccggcccaggctgctctcagacgcacc
atggagaaggagtctcgtaccacccgcttctgtctcatctgcaactacatcagcaggatc
atcgagcctctcacatccagatgttccaagtttcgtttcaaacctttggccaaccagatc
caggaagagcgtctcctggagatctgtgagaaagagaagctccagtacacggaggagagt
atagcggcgttggtgcaagtgtccgaaggagacctgaggaaagccatcacatttctccag
agtgttgctcggctcagcggtaacaaagaaatcaccgttggtgccgtggttgagatagca
ggggtcgttccctccccgatgatccactccctgctccagatctgcttcagaggaacattt
gagaatctagaggtcgtgctcaagaacacggtggacgaaggctacgcagccacccagatc
ctgaaccagctgctggactccatcatagagcaggatctcccggacaagaacaagtctgcc
atcacagagaagatggcggttgtgagtaagtgtctgtccgacggagcagatgaatatctg
cagatgttgagtctgtgctccgtcatcatgcagcaggccagccaggcctag

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