Cololabis saira (Pacific saury): 133457976
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Entry
133457976 CDS
T09849
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csai03009
]
133457976 (ddx10)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133457976 (ddx10)
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
90S particles
Helicases
133457976 (ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
Myb_DNA-bind_5
PAS_11
Motif
Other DBs
NCBI-GeneID:
133457976
NCBI-ProteinID:
XP_061593376
LinkDB
All DBs
Position
13:complement(4068102..4075797)
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AA seq
844 aa
AA seq
DB search
MMEKDGEGSAVPADPVRSFEQWKKRYSRTKARVKRERVSGRKRPEWQVERDYISQLVSRY
PGIEPDSAVKFSDFPISKKTLLGLQQNRFRQPTRVQRQTLAPALQGRDVLAAARTGSGKT
LAFVVPLLEALYRRQWAPEDGLGALVLAPTRELAYQTFTLLRQVGCNHDLSAALLVGGTD
VQAESERISRTNIVVCTPGRLLQHMDQSPGFTASGLQLLVLDEADRILDLGFADTLNAIV
ENLPRSRQTLLFSATQTRSVEQLARLSLRDPEYVWVHETARFPTPATLEQAYLVCELHHK
VNTLYSFIRSHLSKKVIVFFACCKEVQYLFRCFCRLRPGIPVLALHGKQPQMKRVEVYRD
FSRKQKAVLFATDVAARGLDFPAVNWVLQYDCPEDADTYIHRVGRTARYKEGGEALLLLL
PSEEKAMVAQLEGKKVPITKIQVNPEKVQSVEQKLQAFLAQEKEQKERAQRCFMSYLRSV
YLMKNKDVFDVCKLQLQPFALSLGLAVAPRVRFLSKVQRAEGEQEEEQEQELSDFKAQLK
GRSRAEEQESSESEDGSGSETDQKESRTILGGAGDSDEEDLRDLDLLTVKRRDVFNLAGE
QDSGEGAEDGEQQPAEKKTTTTEKETKYKEAKKILKRKFQVNTKVGFTEEGEAVQLWPPA
QRVVAGGEEEEEEEEEEGVSGINVDRARERLKREDQEFDKQEYSRRVKAKHREKRLKERE
ARREASRRGGRGPGESDDEEDEVVAYLANHSEDEFDPSTLPDPDRPHAPSSSSEEEEEEE
EDEVTPPGKRQRSAAGSRGEEQDLIATKKKKKTTPQLEEEHAVLDTGLSLAEDEELVLQL
LGGR
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaaggacggtgagggcagcgcggtccccgcggacccggtgcggagcttcgag
cagtggaagaagcgctacagcaggaccaaggcgcgggtgaagcgggagcgcgtgtcgggg
cggaaaaggccggagtggcaggtggagcgggactacatcagccagctggtcagcaggtac
ccgggcatcgaacccgactccgcagtcaagttctccgacttccccatctccaagaagacg
ctgctgggcctgcagcagaaccgcttccgccagcccacccgggtccagcggcagaccctg
gccccggccctgcagggccgcgacgtgctggccgccgcccgcaccggctccggcaagacc
ctggccttcgtggtgccgctgctggaggcgctgtaccggcggcagtgggcccccgaggac
gggctgggggccctggtgctggcgcccacgcgggagctggcctaccagaccttcacgctg
ctgcgccaggtgggctgcaaccacgatctgtcggccgcgctgctggtgggcggcacggac
gtgcaggcggagagcgagcgcatctcccgcaccaacatcgtggtgtgcacgccgggccgc
ctgctgcagcacatggaccagagccccggcttcacggccagcggcctgcagctgctggtg
ctggacgaggccgaccgcatcctggacctgggcttcgccgacaccctcaacgccatcgtg
gagaacctgccgcggtcccggcagacgctgctgttctccgccacgcagacccgctccgtg
gagcagctggcccggctcagcctgcgcgacccggagtacgtgtgggtgcacgagacggcg
cgcttccccacgccggccacgctggagcaggcctacctggtgtgcgagctgcaccacaag
gtcaacacgctctactccttcatccggagccacctgagcaagaaggtgatcgtgttcttc
gcttgctgcaaggaggtgcagtacctgttccgctgcttctgccggctccggccggggatc
ccggtgctggcgctgcacgggaagcagccgcagatgaagcgggtggaggtgtaccgggac
ttctccaggaagcagaaggccgtgctgttcgccacggacgtcgcggccagagggctggac
ttccccgccgtcaactgggtgctgcagtacgactgtccggaggacgccgacacctacatc
caccgggtgggccgcacggcccgctacaaggaggggggcgaggcgctgctgctgctgctg
ccctccgaggagaaggccatggtggcacagctggaggggaagaaggttcccatcaccaag
atccaggtgaacccggagaaggtgcagagcgtggagcagaagctgcaggccttcctggcg
caggagaaggagcagaaggagcgcgcccagcgctgcttcatgtcctacctgcgctccgtc
tacctgatgaagaacaaggacgtgttcgacgtgtgcaaactccagctgcagccgttcgct
ctgtccctgggcctcgccgtggcccccagggtgcgcttcctcagcaaggtgcagagagcc
gagggggagcaggaggaggagcaggagcaggagctcagcgactttaaggcccagctgaaa
ggaagaagtcgtgccgaggaacaggaaagctccgagtcagaggacggaagtggaagtgaa
acggatcagaaggagtccaggacgatacttggtggtgcgggagacagcgatgaagaggat
ctgcgagacctggacctgctgacggtcaaaagaagggacgtgttcaacctggcgggcgag
caggacagcggcgagggggcggaggacggcgagcagcagccggcggagaagaagacgacg
acgacggagaaagagaccaagtacaaggaggccaagaagatcctgaagaggaagttccag
gtcaacaccaaagtgggcttcacggaggagggagaggcggtgcagctgtggccgccggcc
cagcgggtggtggccggcggggaggaggaggaggaggaggaggaggaggagggggtttct
gggatcaacgtagacagggccagggagaggctgaagcgcgaggaccaggagttcgacaag
caggagtacagccgcagggtgaaggccaagcaccgggagaagaggctgaaggagcgggag
gcccgcagggaggccagccggagggggggccgcggcccgggggagagcgacgacgaggag
gacgaggtggtggcctacctggccaatcacagcgaggatgagtttgaccccagcacgctc
ccagaccccgacagaccccacgcaccatcttcatcctcggaggaggaggaggaagaggag
gaggacgaggtaaccccaccggggaagcggcagcgcagcgctgcagggagccgaggcgag
gagcaggacctcatagccaccaagaagaagaagaagacgacaccgcagctggaggaggaa
catgccgttctggacacgggtctgtccctggcagaggacgaagaactggtcctgcagctg
ctgggggggaggtag
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