Cololabis saira (Pacific saury): 133458253
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Entry
133458253 CDS
T09849
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csai01009
]
133458253 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133458253 (sh3rf1)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133458253 (sh3rf1)
Protein phosphatases and associated proteins [BR:
csai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133458253 (sh3rf1)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133458253 (sh3rf1)
BRITE hierarchy
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_11
Prok-RING_4
zf-Nse
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
133458253
NCBI-ProteinID:
XP_061593929
LinkDB
All DBs
Position
13:15747191..15777672
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AA seq
859 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDASAKVLPCQHTFCRRCLQGILGSRGELRCPECRTLVECAV
DELPSNILLVRLLDGIKQRPRRTGSGAGACTNGTSGAVARAHGSGTREQIPPGAQPQRAQ
AKSTIVRGVPQLPCAKALYNYDGKEPGDLKFTKGDIIILRRQVDENWYHGEMGGVHGFFP
TNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDVLTVIRRVDENWAEGMLGD
KIGIFPISYVEFNSAARQLIELDKPSDSSGDSGEGASLGPQSNGAQRAGEKKNSKKRHSF
TSLTMSHKPMLAPPPQRHSMEISGPVLISSSNPTAAARIGEISGGLSCSAPSQVHICTTG
LIVTPPPSSPVTTATVFTFPSETSYTTLPLDVLPPPPPPPPQSSVSGAAYPLAAGQRPSP
SISDQSGRQRPTVYVAMFQYTPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVF
PGNYMSPVSRTVSGSSKVPMSLCSQAGRGVTIVSPSSAPLCAVVPGSDFNKPLAVCSSAG
PASSQPAAVVTAAQTATGQQPKVPLHVSSQMTVNQARSAVRTAACHSQDRPTAAVTPIQS
AAPVAYLPHLAVCSQPSFSPAQGCSRLGVAMGCAASSLTPPNVSAASLDGDALRPVPVLA
VPVGSGSNAALNPPFNGAAPGCRLDKDVKREKKSLLKLLSSNKKKSRPSPPSSPTLEAEQ
PAAGEVLHGAVGPDTSPPSGPVSCFELETAAAAASSSSSSSAPESSLRKSSPLDGCAPIA
PPPRQPCSSLVSQQQDARPILCERYRVVVSYPPQSEAELELKEGDIVFVHRKREDGWFKG
TLQRNGRTGLFPGSFVDSI
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcagtattgctggatttgcttgagtgccctgtttgtctggagcgactcgat
gcctctgcaaaggttcttccctgtcagcacaccttctgccgccgatgtctccaaggcatc
ctaggctcccgcggggagctgcgctgtccagagtgccggacgctggtggagtgtgcggtg
gatgaactaccgagcaacatcctcctggtgcgtctgttggatggcatcaagcagaggccg
aggaggaccggctctggggctggagcttgcaccaacggtacatctggagcggtggcgaga
gcgcatggaagtgggacgcgggagcagatccctccaggggcacaaccccagcgggctcag
gccaagagcaccattgtcaggggcgtaccgcagctgccttgtgccaaggcactgtataac
tatgacgggaaggaaccaggagacctcaaattcactaagggggacatcatcatcctgcgc
cgacaagtggatgagaactggtaccacggagagatggggggagtccatggctttttcccc
accaactttgtccaggtcatcaagccgttgccgcagccgccccctcagtgcaaagctctc
tatgactttgagctgaaagacaaagaggccgacaaggactgtctgcccttctccaaggat
gacgtcttgactgtgatccgcagagtagatgaaaactgggcagagggaatgctgggagat
aaaatagggatttttcccatctcatatgtggagttcaactcggcagcacgtcagcttata
gaattagacaagccatcagactccagcggagactctggcgagggggcctccttggggccc
cagagcaatggtgcccagcgggcaggggagaagaagaacagcaagaaacgacattccttt
acctcacttactatgtcccacaaacctatgctagctccccccccccaacgccactccatg
gagattagcgggccggtcctcattagctccagcaaccccacagcagcggctcggattgga
gagatcagtgggggtctttcctgcagcgcaccttcacaggtacatatttgcacaactgga
ctaattgtgaccccaccccctagtagtcctgttaccacagcaacagtcttcacgtttcct
tcagagacaagctacaccacccttcctttggacgttctgccgccgcccccacctcctccc
ccgcagtcctctgtcagcggggcggcatatccactcgccgccggacagagaccctccccc
agcataagcgaccaaagtgggagacaaagacccacagtgtatgtggcaatgttccagtat
actcctcgtaaggaggatgagctggagctcaggaaaggagagatgttcctggtgctggaa
cgctgtcaggacggctggttcaagggcacgtctatgcacacaggcaagatcggtgtcttt
cctggaaactacatgagcccggtcagcaggacggtgtctggaagcagcaaagttcccatg
agtctctgttctcaggccggtagaggagtcaccatcgtcagcccttcctctgctcccctc
tgtgctgttgtcccaggctctgatttcaacaaacccctggctgtctgctccagcgctgga
cctgccagctcccagcctgcagctgtggtaacagcagctcagacagccacaggccagcag
ccaaaagtcccgttgcatgtcagctcccaaatgactgtaaatcaggctcgcagtgcagtc
aggacagctgcgtgccacagtcaggacaggcccacagcagcagtgacccctatccagtct
gcagcacctgtcgcctatctcccacaccttgcagtgtgctcacagccttccttcagtcct
gctcaaggctgctcccggttgggagtggcaatgggctgtgctgcgtcctctctgaccccc
cccaatgtgagtgctgcttccctggacggcgatgctctgagacctgtgcctgtcctcgct
gtgcctgttggctccgggagcaacgccgccctcaatccccctttcaacggtgcagccccg
ggctgccggctggacaaggatgtcaagagagaaaagaaaagtcttctgaagcttttgtcc
tccaacaagaagaagtctcgtccttcacccccctcctcgcctacgcttgaggcagaacaa
cctgctgctggagaggtgctgcacggtgccgtgggccccgacacatcccctccctctggc
ccagtcagctgctttgagctggaaactgctgctgctgctgcatcgtcgtcctcctcctcc
tcagccccagagtcctccctgcggaagagcagtcccctggatggctgtgctcccatcgct
ccacctcctcgccagccctgctcctctcttgtatctcaacagcaagacgcgcgtcccatc
ctatgtgaaaggtacagggtggtggtgtcatatcctccgcagagcgaggctgagctggaa
cttaaggagggcgacattgtgtttgtccaccggaagagagaggacggctggttcaaaggc
acgctgcagcggaacggcaggaccggcctgttccctggcagcttcgtcgacagcatctaa
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