Cololabis saira (Pacific saury): 133458580
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Entry
133458580 CDS
T09849
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
csai00535
]
133458580
00536 Glycosaminoglycan binding proteins [BR:
csai00536
]
133458580
04091 Lectins [BR:
csai04091
]
133458580
Proteoglycans [BR:
csai00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
133458580
Glycosaminoglycan binding proteins [BR:
csai00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
133458580
Lectins [BR:
csai04091
]
C-Type lectins
Lecticans
133458580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
I-set
Motif
Other DBs
NCBI-GeneID:
133458580
NCBI-ProteinID:
XP_061594616
LinkDB
All DBs
Position
2:14177783..14210184
Genome browser
AA seq
1787 aa
AA seq
DB search
MIRRTVLLSLCLSIISATFDYIYEEHALMDPEEVLSVSVPLEGPQRPLLGGMLVLPCYFE
DHTVPDPGAPTITPLSHRIKWSLVTKEKVTTILVAMDGQVHIAESYLDRVHLLSYPETPT
DASIKISELRSSDTGAYRCEVQHGIEDNHDIVHVQVQGVVFHYRPIMGRYTLTFEKAKAA
CTQNSAVMASPEQLQAAYDDGFHQCDAGWLSDETVRYPIHDPRVNCYGDKEELPGVRTYG
VRDLNETYDVYCFAEKMTGRVFYTAVAEKFTFSEAALACFNQGAQLATTGQLYLAWLGGM
DVCNAGWLGDRSVRYPINVRRQQCGGGLLGVRTVHLHTNQTGYPLPESRYDAFCYTDSSD
EGGSGTDEESGVLVVTTVTRAPDVFFSRKTTESEAIGEVETQRPTELTFTYTESPTEQPQ
PPNVTEIIITDQIEAVTARPGVSREPSEGFVMPPEGVVFHYRSRAGRYAFTFVEAQLACQ
RVGGSIATPQQLQAAYEAGYHQCDAGWLLDQTVRYPIVFPREKCSGDLRDEPGVRSYGLS
PADERYDVYCYTEGLKGEVFHVRSAEGFTYEEALSSCQEHNATLASTGELYAAWKTGFDK
CRAGWLLDRSVRYPIINPRAGCGGGKSGVHTMYAHPNQTGYPELDARFDAYCFRADIQLI
ANETGLNITDIQEALINLTSVTDLLRPAIPPIAPIPVEISGSGSGSADYGSGDLSGSGDQ
VTSGEGSSSGQQSGSGDVSGSGDQVTSGEGSSSGQLPGSGDVSGSGDQVTSGEGSSSGQL
SGSGDVSGSGDQVTSGDGSSSGDLSGSGDHVTSGDGSSSGQLSGSGDVSGSGDQVTSGEV
SSSGDLSGSGDQVTSGDGISSGVLSGSGDFSGKTSTELSHGESGFSTSGSGLSGEGSGIS
VVFSGIDSIASGEGSASGGLQEAEEGSTEILIFPSSGMGSGELSGSGDQSLSGSGSGFIS
GQDVSGFSGSSSGAFSGIGSGQSGQFSGDGDNPILLIDDKLIDASIAKKEYELGGNPPIY
SGSGDFSGQDISGSSGSSSGAFSGIGSGQSGQFSGDGDNQILLIDDKLIDASMAQKEYEL
GGNPPIYSGSGDYSGQDISGSSGSSSGAFSGIGSGQSGQFSGDGDNQILLIDDKLIDASN
AQREYELGGNPPVYSGSGDFSGQDISDSSGSSSGAFSGIGSGQSGQFSGYGDNQILLIDD
KLIDASIAQKEYELGGNPPVYSGSGDFSGQDISGFSGSPSGAFSGIGSGQSGQFSGDGDS
QILLVDDKLIDTSMAQKEYELGGNPPVYSGSGDFSGSRILSGDSSGSASGSGYQIFPGVT
FVGSGFTRLSVSATEEHEEASGFIFYSSGQESGRLSGFGSSSFFSESGSGMVGSGFPGSE
SSASGEEGSVTFLTGDLMRKVPTDTSVSLELGQGSVEYSGEGSGSSDGFHSGGKDTESST
ASVIISTSSSGASSGDLEGLIKSSAEPEASLQEVKMTETPDGMYSTPGPEFGPSGLLAPP
TADKPAFREPPITIEGFNPCEPNPCGNASCTAEDGVAVCFEVDVCHPNPCANGATCVEGA
DSFKCLCLPSYGGKRCEIDEQRCEDGWTKFQGNCYLHISDRKEWQDAEQHCRELKAHLVS
IITPEEQQFVNSNSQDYQWIGLNDKTLQNDFQWTDGTPVQYENWRPNQPDNYFGSGEDCV
VMIWHEYGQWNDVPCNYHLPFTCKKGPVSCGAPPEVDNAYTFGKKRLEYPVNSIVRYQCK
PGFRQRHPPVVRCQADGRWEEPQVECTDVKTRRRIYDRIPATRSTRK
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgatccggcggacggtgctgttgtctttatgtctgagcatcatctcagcaacatttgat
tacatttatgaggagcacgccttgatggaccctgaggaggtgctgagcgtcagcgttcct
ctggaggggccgcagcgtcctctgcttggggggatgctggtcctaccatgctactttgag
gaccacaccgttccagatcccggggctcccaccatcaccccgctgtctcaccgtatcaaa
tggagcctcgtaaccaaggaaaaggtcacgactatcctggtggccatggatggacaggtg
cacatcgctgagagctacctggacagagttcatctgctgagctatcccgaaaccccaaca
gacgccagcatcaagatatccgagctgcgctccagtgacacaggagcgtatcgctgcgaa
gttcagcacggcatcgaggacaaccatgacatcgtgcatgtccaagttcaaggtgtcgtg
tttcactatcgacccatcatgggtcgctacactttgacgtttgaaaaggcgaaggcagcc
tgcactcagaacagcgctgtcatggcatcacccgaacagctccaagctgcctacgatgat
ggtttccaccagtgtgatgctggttggctgtccgatgaaacagtcaggtatccaatccac
gatcctcgtgtgaactgctatggtgacaaagaagagctgccaggtgtcaggacttacgga
gtgagagacctcaatgagacatatgatgtgtactgctttgccgagaagatgacaggtaga
gttttctacactgctgttgcagagaagttcaccttctccgaggctgcgttggcatgtttt
aaccagggagctcagctggccaccacaggccagctatacttggcctggctgggagggatg
gacgtctgtaacgccggctggctgggcgacaggagcgtccgttatcctatcaacgttcgt
cgccagcagtgtggagggggtctgctgggggtgcggactgttcatctccacacaaaccag
acaggatacccacttcctgagtcccgatatgatgccttctgctacactgactcctctgat
gaaggaggttcaggcacagatgaggaaagtggcgtgctggtcgtcaccacagtgacgcgg
gccccagacgtgttcttcagcaggaagaccacagagagcgaggcaattggagaggtggag
actcagcggcccactgagctgacgttcacctacacggagagccccacagagcagccccag
cctcctaacgtcactgagatcatcatcactgaccagatagaggcagtcactgcccggcca
ggagtcagcagggagcccagcgagggcttcgtgatgcctccagaaggtgtggtcttccac
taccggtcaagagctggccgatatgctttcacatttgttgaagcccagctggcttgccag
agggttggaggctccatcgccacaccacagcagctgcaggctgcgtacgaggctggatat
caccagtgtgatgcaggttggcttctggaccagactgtaagatatcccatcgttttccct
cgagagaagtgttctggagatctgagagatgagcctggagttcggtcttacggattgagt
ccggcagatgagcgatatgatgtttactgctacaccgaaggactcaaaggagaggttttc
catgtaagatctgcagagggtttcacttacgaagaggcgctttcgagctgtcaagagcac
aacgctacgttggcctccactggagagctttatgcagcctggaaaactggttttgacaaa
tgtcgtgcaggctggctactggatcgtagtgtccgttatcccatcatcaacccccgtgct
gggtgtgggggagggaaatcaggagtccacaccatgtacgctcacccaaaccagacgggc
taccctgaacttgatgccagatttgatgcatactgtttcagagcggacattcagctcatt
gcaaatgaaactggactcaacatcacagatatccaggaggctctaataaacttgacatcg
gttactgatctgttgaggcctgccattcctcccatcgctccaattcctgtggagatttca
ggctctggttcaggctcagcagattatggttcaggagacctgtctggatctggagatcag
gttacctctggagagggctcctcttctggacaacagtcgggttctggagacgtctcaggt
tctggagatcaggttacctctggagagggctcctcttctggacaactgccgggttctgga
gacgtctcaggttctggagatcaggttacctctggagagggctcctcttctggacaactg
tctggttctggagatgtctcaggttctggagatcaggttacctctggagatggctcctct
tctggagacctgtctggatctggagatcacgttacctctggagatggctcctcttctgga
caactgtcgggttctggagacgtctcaggttctggagatcaggttacctctggagaggtc
tcctcctctggagacctgtctggttctggtgatcaggttacctctggcgatggaatttct
tctggagtcctatcaggttctggagatttttctggcaaaacaagtactgagctttcacat
ggggagtcagggttcagcacttcgggatcaggtctcagtggagaaggatctggcatcagt
gtcgttttctcaggaattgacagtattgcgtcaggagaaggctcagcttcaggtggactt
caagaagcagaagagggaagcacagaaatccttatcttcccttcttctggtatgggctct
ggagagcttagtggtagtggggatcagtccctgtctggttctggatctggtttcatatca
ggccaggacgtttctggtttcagtggttcctcttcaggagctttctctggaattggaagt
ggacaatcaggacagttttcgggagatggagacaatccgatcttactgatagatgataaa
ctgattgatgcatcaattgccaagaaagagtacgagcttggaggaaacccaccaatctac
agtggttcaggagacttttcaggccaggacatttctggttccagtggttcctcttcagga
gctttctctggaattggaagtggacaatcaggacagttttcgggagatggagacaatcag
atcttactgatagatgataaactgattgatgcatcgatggcccagaaggagtacgagctt
ggaggaaacccaccaatctacagtggttcaggagattattcaggccaggacatttctggt
tccagtggttcctcttcaggagctttctctggaattggaagtggacaatcaggacagttt
tctggagatggagacaatcagatcttactgatagatgataaactgattgatgcatcaaat
gcccagagggagtacgagcttggaggaaacccaccagtctatagtggttcaggagacttt
tcaggccaagacatttctgattccagtggttcctcttcaggagctttctctggaattgga
agtggacaatcaggacagttttcgggatatggtgacaatcagatcttactgatagatgat
aaactgattgatgcatcaattgcccagaaggagtacgagcttggaggaaacccaccggtc
tacagtggttcaggagacttttcaggccaggacatttctggtttcagtggttccccttca
ggagctttctctggaattggaagtggacaatcaggacagttttcgggagatggagacagt
cagatcttactggtagatgataaactgattgatacatcgatggcccagaaggagtacgag
cttggaggaaacccaccggtctacagtggttcaggagacttttcgggatcaagaattctc
agtggtgactcaagtggttcagcctctggaagtggctatcaaatcttccctggtgtgacc
tttgtgggttcaggcttcactaggctcagtgtgtcagccaccgaagagcatgaagaggcc
tctgggtttatattctacagctctggacaagaaagtggacgactgtctggttttggaagc
tcaagtttcttttctgagtctggatcaggaatggtcggatcaggatttcctggctcagag
tcctcagcgagtggagaagaaggcagtgttacattcctgactggcgatctaatgagaaag
gtaccgacagacacttcagtgtctctggagctgggacaggggtcggtagagtacagtgga
gaaggaagtggcagcagcgatggctttcattctggtggaaaagacactgagtcatccact
gccagcgtcatcatttcaacatcttcttctggggcatcctctggtgatcttgagggtcta
ataaaaagcagcgcagaaccagaggcgtcccttcaagaggtgaaaatgacagagacccct
gatggcatgtattccaccccgggcccagaatttggcccttcaggacttttggctcctcct
actgcagataaaccagcttttagagagccaccaatcaccatagaaggctttaacccctgt
gaacccaatccttgtggtaatgcatcgtgcacagcagaagatggagttgctgtctgtttt
gaagtagatgtgtgccaccccaacccttgtgccaatggagccacctgtgtggagggtgca
gactctttcaaatgcttatgcctgcccagctacggagggaaacgctgtgagatcgacgag
cagcgatgcgaggacggctggaccaagtttcagggtaactgctacctgcacatttctgac
cgaaaggagtggcaggacgcagagcagcactgccgggagctgaaagcacacctggtcagc
atcatcacgccggaggagcagcaatttgtcaactcaaattcacaggactaccagtggata
ggactgaatgacaagacactgcagaatgactttcagtggactgatgggacaccggtgcaa
tatgagaactggaggccaaaccagccagataactacttcggctctggagaagactgcgtg
gtgatgatctggcatgagtacggccagtggaacgacgtgccctgcaactaccacctgcca
ttcacctgcaaaaaaggcccagtgtcatgtggggcgccgccagaggtggacaacgcttac
acgtttggtaaaaagaggctggaataccccgtcaactccatcgttcgttaccagtgcaaa
ccaggatttagacagcgccatccaccggtggtacgctgtcaggctgacggacggtgggag
gagccccaagtggaatgtactgatgtgaaaaccagaaggagaatatatgacaggattcca
gcaaccaggagcacaagaaaatga
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integrated database retrieval system
