Cololabis saira (Pacific saury): 133458698
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Entry
133458698 CDS
T09849
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
133458698 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133458698 (vcam1b)
04090 CD molecules [BR:
csai04090
]
133458698 (vcam1b)
04091 Lectins [BR:
csai04091
]
133458698 (vcam1b)
Cell adhesion molecules [BR:
csai04515
]
Immunoglobulin superfamily
VCAM
133458698 (vcam1b)
CD molecules [BR:
csai04090
]
Proteins
133458698 (vcam1b)
Lectins [BR:
csai04091
]
I-type lectins (Siglecs)
133458698 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C2-set_2
Izumo-Ig
Ig_C17orf99
REJ
Motif
Other DBs
NCBI-GeneID:
133458698
NCBI-ProteinID:
XP_061594855
LinkDB
All DBs
Position
13:complement(39309299..39334390)
Genome browser
AA seq
808 aa
AA seq
DB search
MDPLLLQLVSALLLLWGVQALQVDVFPRRPVFRVGDREQLVCHIRDCPTTPTVIWSPPDD
RPLPGSFHTNRTHSVLTLPAVQPGDEGTLRCKVTCGGDVRQGTSSVQVYAFPSAPVISGE
GQMRLGVSSSLSCRVPGLHPPERLSLTWLRGDAVLQENRGLDRSTYTFVPQHRDIGANIS
CRAALELDGLPAEDTTRETTVPLNVLYPPADLAISLSVEVMAGAPLTLNCSADGNPAPSI
SWSFGAADGETLRRRGAGPLTFTAVTLAEAGAYRCDAQNSEGNRTAAVNVTVLAPPTNTS
MSVSPGDQVMEGQEVTFTCRSEGSPAPRLVLRREGAELQQTEAGPLTLSVRVEASALYEC
EASNQHGSQKVSTFITARALRVEVGPRVEAERGSSQNLTCRVSGCLGPPTVTWRKLEQNR
AVVLEPRQQQEGQTQLVLGGLDLQHQGVYRCQARCGPASGAGDVPVQVYALGSDPVLDLP
GPVRLDRESEFYCRVFDVFSAGGLRIRWSWGNATILTESFTFSGSLENVTSVLRRRVEQN
QTVLSCRAELLTEAGDLLRARTASVPLQVHYPPRNTSLTVNPGQEVLEGDQVTITCHSDG
APPPMLVLRRNGAELQRSDSSSPPSLTFNISSVLLGDSDRYDCEARNPYESEVVSRSITV
KAPPRDTTVVVRPSTTVQEGQNITVYCRTTSFPRSSVVLTKLSSGSSGSSGSSGSALHSS
DGVFLLANVSAGDSGRYLVNVTNDLGCEVREFNITVRASSRLPPSLGAVVPAACVAAGLA
ASALVLDYLRRSRRKGFYQVDGCAPPSA
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggatcctctgctcctccagctggtctcagcgctgctgctgctgtggggcgtccaggcc
ctgcaggtggacgtgtttccccgcaggcccgtgttccgggtcggggaccgggagcagctg
gtctgccacatccgggactgtcccaccaccccgaccgtgatctggtccccgccggacgac
cggcccctgccgggctccttccacaccaaccggacccactcggtcctgacgctgccggcc
gtgcagcccggcgacgagggcacgctgcgctgcaaggtcacctgcgggggcgatgtccgg
caggggacgtcctccgtccaggtctacgccttcccgtcagccccggtgatctcgggtgag
ggccagatgcgactgggcgtcagctccagcctcagctgccgggtgccgggcctgcacccg
ccggagcggctgagcctcacctggctccggggggacgccgtcctgcaggagaaccggggt
ctggaccggtccacctacaccttcgtcccgcagcaccgggacatcggggcgaacatcagc
tgccgggcggcgctggagctggacgggctgccggccgaggacacgacccgggaaaccacc
gtccccctcaacgtgctctacccccccgctgacctggccatctccctctccgtggaggtg
atggccggcgcgccgctcacgctcaactgctccgccgacgggaacccggcgccgagcatc
agctggagcttcggggcggcggacggcgagactctgcggcggcgtggcgccggcccgctc
accttcaccgctgtgacgctcgccgaggccggagcctaccggtgcgatgcacagaactcg
gaaggaaaccggaccgctgccgtcaacgtcaccgtcctcgctcctcccaccaacacctcc
atgtcggtgagtccaggcgaccaggtgatggagggtcaggaggtgacgttcacctgccgc
tccgagggaagtcccgcccccagactggtgctgaggagggagggggcggagctacagcag
acggaggccggccccctgaccctcagcgtccgggtggaggcctcggccctctacgagtgt
gaggcctccaaccagcacggttcccagaaggtctccactttcatcaccgccagagctctg
cgggtggaggtcgggccccgggtggaggcggagcggggatcctctcagaacctgacctgc
cgcgtctctggatgtctgggcccccccacggtgacctggaggaagctggagcagaaccgg
gccgtggtcctggagccccggcagcagcaggagggtcagacccagctggtgctggggggg
ctggacctgcagcaccagggcgtgtaccgctgccaggcccggtgcgggccggcctccggg
gccggagacgtcccggtgcaggtctacgcgttgggttctgatccggtcctggacctcccc
ggtccggtccgtctggaccgggagtctgaattctactgccgagtctttgacgtcttctct
gccggcgggctgaggatccgctggtcgtgggggaacgccaccatcctgacggagtccttc
acgttctccggttccctggagaacgtgacgtcggtcctccggcgccgggtggagcagaac
cagacggtcctgagctgccgggccgagctgctgacggaggccggggacctgctccgggcc
agaaccgccagcgtccctctgcaggtccactatcctcccaggaacacctccctgacggtg
aacccgggccaggaggtgctggagggcgaccaggtgaccatcacctgccactcagacggg
gctccgccccccatgctggtcctgagaaggaatggggcggagcttcagaggagtgactcc
tcctccccgccatcgctcaccttcaacatctcctccgtcctgctgggagactctgaccgc
tacgactgcgaggccaggaacccgtacgagtccgaggtggtgtccagatccataaccgtc
aaagctcccccgagagacaccacggtggtggtccggccgtccaccacggtccaggagggc
cagaacatcacggtctactgcagaaccaccagcttcccccggtcgtccgtggttctgaca
aagctgtccagcgggtccagcgggtccagcgggtccagcgggtcggcgctgcactccagc
gacggcgtgttccttctggccaacgtcagcgccggagactcgggccggtacctggtcaac
gtgactaacgacctcggctgtgaggtccgagagttcaacatcaccgtcagagcgagcagc
agacttcctcccagcctcggcgccgtggtcccggccgcctgcgtcgcagccggactggcg
gcttcagccctggttctggactacctgaggaggtccaggaggaaagggttctaccaggtg
gacggctgcgcccccccgtcggcctga
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