Cololabis saira (Pacific saury): 133459311
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Entry
133459311 CDS
T09849
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csai03009
]
133459311
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133459311
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
90S particles
Helicases
133459311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Ribosomal_S7e
DUF2992
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133459311
NCBI-ProteinID:
XP_061595178
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All DBs
Position
14:complement(40059828..40074412)
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AA seq
667 aa
AA seq
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MDAFDLFRKLGAGAKFDLKRFGEDAARFKVARSRAGEESSEQLSAIDYFGSGETSGAQSG
DEEEEDEEGGRGDSGGKRKCKEEKAAKRKKKKAKRSELASEDGLMKESEGNGITWMSSLD
RKIQNLQSEDKSSLKKLKHLHQEKINSIRSQHRINVHGCDVPDPVCTFEELQSEYCLNPN
ILHNLVDAGLKSPTPIQMQAIPLMMHSRELLACAPTGSGKTLAFCVPLLSHLKQPANQGF
RAVIISPTRELASQTYRELLRFSEGVGFRIHILDKASLAAKKYGPKSNKKYDILVTTPNR
LVFLLKQDPPAIDLSRVEWLVVDESDKLFEDGKRGFREQLATVFLACSNPKVRRAFFSAT
CTPQVEQWCRLNLDSLVSVNIGSRNSAVNTVEQELLFVGTESGKLVAMRDIVRKGFLPPV
LVFVQSIDRARELFHELVYEGINVEVIHADRTQQQRDNVVNSFRSGKIWVLICTALMARG
IDFKGVNLVLNYDFPTSAVEYIHRIGRTGRAGHQGKAITFFTESDKPMLRSIANVIKQAG
CPVPDYMIGFKKIHSKVKRRLEKKPPKRSTICTTPRFMMKKKGNAQKKEQQQESSRKQNE
EKEPQTTISQQKGGKKTEGHGLKKKSKPSDKGVKIPKESNSSGAKLKKNLKKKNKLKGDL
KTSMETG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggacgccttcgacctgtttcgaaaactcggagccggagccaaattcgacctgaagaga
ttcggcgaagacgcagctcggtttaaggtggccagatctcgggcaggggaagaatcctcg
gagcagctctctgccatcgactacttcggctcaggggagactagtggagcccagagcgga
gacgaggaggaggaggatgaggagggaggaagaggagactctggagggaagagaaagtgc
aaagaagagaaagctgcaaagcggaaaaagaaaaaggcaaaaaggagcgagttggcctca
gaagacggactgatgaaggagtcggagggaaacggcatcacatggatgtcgtcgctggac
agaaagatccaaaacctgcagagtgaagacaagtcgtcactgaagaagctgaagcatctt
catcaggagaaaattaattccatccgatctcaacatcgcataaacgtgcacggctgtgac
gtgccggaccccgtgtgcacgttcgaggagttgcagtccgagtattgtctcaacccgaac
atccttcacaacctcgtagacgcaggactgaagtcgcccacgccgattcagatgcaggcc
attcctctcatgatgcacagtcgggagctcctggcctgtgctcccacaggatccgggaag
acgttggccttttgcgtgccgctgctcagccacctgaagcaaccagccaaccagggcttc
agggccgtgatcatctcccccaccagagagctggccagccagacttacagggagcttctc
cgcttctccgagggagtgggcttcaggatccacatcctagacaaagcttctctggccgcc
aagaaatatggaccaaagtcgaacaaaaaatacgatattttggtgacgactcccaacagg
ctggtgttcctgctgaagcaggaccccccggccatcgacctcagcagagttgagtggctg
gtcgtagacgagtcggataagctgttcgaggacggtaagaggggcttcagggagcagctg
gccaccgtgttcctggcctgctccaaccccaaggtgcgccgggctttcttcagcgccacc
tgcaccccccaggtggagcagtggtgccgcctgaacctggacagcctggtctccgtgaac
atcgggagcagaaactcggcggtgaacacggtggagcaggagctgctgttcgtcgggacg
gagagcggcaagctggtggccatgagggacatcgtcaggaaggggttcctgcctcccgtg
ctggtgttcgtccagtccatagaccgagcccgcgaactcttccacgagttggtgtacgaa
gggatcaacgtggaggtgatccacgccgaccgcacgcagcagcagagggacaacgtggtg
aacagcttccgctccggaaagatctgggtgctgatttgcacggctttgatggccagaggg
atcgacttcaagggagtgaacctggtgctgaactacgacttccccaccagcgccgtggag
tacatccatcggattgggcgaactggcagagctggccatcaagggaaggccatcaccttc
ttcacggagagtgacaagccgatgttgcgcagcattgcaaatgtcataaaacaagcgggc
tgtcccgtcccggactacatgatcggcttcaagaagatccacagcaaagtaaagcggagg
ctggagaagaaacctcccaagagaagcaccatttgcacaactcctcgcttcatgatgaag
aaaaagggcaacgcacagaaaaaagagcaacaacaggaatcgtcgaggaagcagaatgaa
gaaaaagaacctcaaacaacaatttcccagcagaaaggggggaagaaaacagaaggacac
gggttaaagaaaaaaagcaaaccaagtgacaaaggagtaaaaatacccaaggaatccaat
tcctcaggagctaaattaaaaaagaacctaaagaagaaaaacaaactaaaaggggacttg
aagacaagcatggaaacaggctga
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