Cololabis saira (Pacific saury): 133459385
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Entry
133459385 CDS
T09849
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04350
TGF-beta signaling pathway
csai04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133459385 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133459385 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133459385 (neo1a)
Cell adhesion molecules [BR:
csai04515
]
Immunoglobulin superfamily
DCC/UNC5 family
133459385 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
fn3_2
NDNF
Ig_Rha78A_N
Tissue_fac
Fn3_Dep-1_3rd
fn3_SORL1
C2-set_2
Sp38
Ig_5
EphA2_TM
CD34_antigen
TMEM154
Ig_PDGFR_d4
Motif
Other DBs
NCBI-GeneID:
133459385
NCBI-ProteinID:
XP_061595264
LinkDB
All DBs
Position
2:complement(18171814..18359208)
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AA seq
1530 aa
AA seq
DB search
MAERGALWLLSLLCLTFLLPESSAARHADKGSAANPFSPFWFTVEPQDTLASRGNSALLN
CSVHSDAATPARIEWKKDGTFLSLISDERRRILPDGSLLFSHVVHSKHNKPDEGIYQCVA
TIDSLGSISSRTARLSVAGTPKFASQPSPATVHLGDSQVMSCEVNVDPLPFTRWEKDRQP
LELSSRLIQLPSGALVFSNASEADAGLYRCLVESVGSSKTSDEAQLQTVPETGEERKLEF
LVQPLSVAKVAGSSVLLPCVASGFPVPHIRWMFGDKLLEESEGRVEVVGGGSLQISNLTE
EDAGVYTCVAENSNTSAEAQAQLTVQVPPEFLKRPSNIYAHESMDIVFECEVSGSPAPTV
KWLKNGDAVIPSDYFKIIKEHNLQVLGLVTSDEGFYQCLAENDAGNIQSSAQLIILDHDV
ALPSFPPPSLAPNTTDHVTPGSGGVAGPAGPTPSAPRDVVASLVSTRFIKLTWRQPAEPH
GDDLTFSVFYSQDGMSRERVVNTSRPGEMQVTIQNLMPDTKYRFRVVAHNSNGQGESSAA
LKVATQAEVQVPGPAPNLQAVSNTPTSVALTWDKPLTGNGESLTYKLYYTDQTVGNEQDV
DIDSQSYTLTGLKKNAEYSFRVVANNKHGPGVSTEDIVVRTLSDVPSAPPQNLTVEVQNS
KSIMLRWQPPPLSGQNGEITSYKIRYRKGSRRSESAVTTAGTQLYKLIDGLEPGTEYSFR
VSAMTVNGTGPATEWTAAETFESDLDESRVPDQPSSLHVRPLVNSIVVSWTPPENQEIVV
RGYTIGYGIGSPHAQTIKVDYKQRYYTIENLDASSHYVITLKAFNNVGEGIPVYESAITR
QQSDPIDPDVDLYELYHAPYTPVPDPTPMMPPVGVQAAVLSHDTIKVTWADNSLPKNQKI
TDNRFYTVRWKTNIPANTKMKMANTSSLSHMVTSLKPNTLYEFSVMVTKGRRTSTWSMTA
QGTTFESIPSSSPKDVTVVSKENKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDW
VIEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSEAVQFRTPKTESSDKMANDQA
SNIPAKPGPPHPNINGPWTPLGKSDGNSENPIVVIVIIISVGAFIIIVVVVGAFLCTRRT
TSHQKKKRAASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPDPNPVMTETPIP
RTSQDITPAESSLESNPHLQQRRNSYRDGDGSVNKNNCRPSLIGWFPPYLLGHESEDSLS
TLAGRRGMRPKMMMPFDAQPPQPVISAHPIHSLDNHHHHYHMGSLASPTRGYLYHQGSGH
LRSHTCTPLSHLDRVDSTESVRNTPSSEPLPPAAASSQASCPSEILADPEGSYHGSTTTE
EEASYSSNLPPHRSAHPHAHAHPLKSFAVPAIPVSGHPSYESPALPSTPLLAQTGAPTHP
HVVKTASIGTLGRTRIPMVVTVPNAPDVPETSRMLEDVDSVLASLAPCPSPAPRSNPVPL
PQSYEPDELTEEMAHLEGLMKDLNAITTAP
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagctctgtggctcctctctctcctctgtctcacctttctcctcccg
gagagcagcgcggccaggcatgccgacaaaggttcagcagcgaaccccttcagccctttc
tggttcacggtggagccccaggacacgctggccagccgggggaactctgcactgctcaac
tgctcagtacacagcgacgcggccacgccggcgcgcatcgagtggaagaaggacggcact
ttcctgagcctgatttcggacgagaggcgccgcatattgcccgatggctcgctgctcttc
agccacgtggtccactctaagcacaacaagccagacgagggcatctatcaatgcgtcgcc
accatcgacagcctggggtccatttccagccgcacagcccgcctttctgtagcagggacg
cccaagttcgccagccagccgtcacccgccaccgtgcatctaggagacagtcaggtcatg
tcctgcgaggtcaacgtggatccgctgccgtttacccgctgggagaaagaccgacagccg
ctggagctgagcagcaggttgatccagctccccagtggagctctggtcttcagcaacgcc
tcggaggccgacgccggcctctaccggtgtctggtggagagtgtgggctcctccaagacg
agcgacgaggctcagctgcagacggtgccagaaaccggagaagagaggaagctggagttc
ctggtgcagcctctctctgtggccaaggttgcaggttccagcgtgttgctgccgtgtgtg
gcctctggtttccccgtgccgcacatccgttggatgtttggagacaagctgctggaggaa
agcgagggtcgcgtggaggtggtgggaggaggcagtctccagatctccaatctcactgag
gaggacgccggcgtctacacctgcgtggcagaaaattccaacaccagcgccgaggcccag
gcccagctcacagttcaagttcctccagagtttctcaagcggccgtccaacatttacgcc
cacgagtcgatggacatcgtctttgagtgcgaggtttcaggctccccagctccaacggtg
aagtggctcaagaatggagacgctgtcattcccagtgactacttcaaaattattaaggag
cacaacctgcaggtcctgggcctggtcacgtccgatgaaggtttctatcagtgtcttgca
gaaaatgatgcaggaaatatccagtcaagtgcccagctcatcatcttggatcacgacgta
gccctgccctccttccctcccccctcactggctcctaacactactgaccatgtaacgcca
ggctccggaggtgtagccggtccggcggggcccaccccctccgccccgcgggacgtcgtg
gcctccctggtctccacccgcttcatcaagctgacctggcgccaaccggccgagccgcac
ggagacgatttaaccttctcggttttctacagccaggacggcatgagcagggagcgggtg
gtaaacaccagccgaccaggggagatgcaagtcaccatccagaacctcatgccagacacc
aagtatcgcttcagggtcgtggctcacaacagcaacgggcaaggcgagagctcggcagcg
ctcaaagtggccacccaagctgaagtgcaagtgccgggccctgctccgaacctgcaggcg
gtgtccaacacgccaacctcggtggctctcacctgggacaaacctctcaccggcaacgga
gagagtctcacctacaagttgtactacacagaccaaaccgttggtaacgagcaggacgtt
gacatagacagtcagtcttacaccttgaccgggctgaagaagaacgcggagtacagtttc
cgcgtggtggccaacaacaagcacggcccgggagtctccacggaggacatcgtcgtccgc
accctgtctgacgttcctagcgctcctccgcaaaacctcaccgtggaggtccagaactcc
aagagcatcatgcttcggtggcagcccccacccctgagcggccagaatggggagatcacc
agctacaagattcgctaccggaaaggatcccggaggagtgagtcggctgtcaccactgca
gggacgcagctttacaagctcatcgatggtctggagcccgggacagagtactccttcagg
gtgtcagccatgacggtgaacggcaccggaccggccaccgagtggaccgcagcggagacg
tttgagagtgatctggatgaatcccgagtaccggaccagcccagctcgctgcacgtgcgg
cccctggtcaacagtattgtggtgagctggacgccaccggagaaccaggaaatagtggtg
cgtggctacaccatcggctacggtattgggagcccccacgctcagaccatcaaagtggac
tacaagcaacgctactacacgatcgagaacctcgacgccagctcccactacgtgatcacg
ctgaaggccttcaataacgtgggggaagggattccggtttacgaaagcgccatcaccaga
cagcagtcagaccccatagaccccgacgttgacctgtacgaactctatcatgctccatac
accccagtaccagaccctactcccatgatgcctcccgtgggtgttcaggccgccgtgctg
agccacgacaccatcaaggtgacctgggccgacaactcgctgcccaagaaccagaagatc
acagataaccgcttctacaccgtgagatggaagaccaacattcccgccaacactaagatg
aagatggccaacacctccagcctgagccacatggtgaccagtctgaaacccaacacgctg
tacgagttctctgtcatggtgaccaaaggccgccgcaccagcacgtggagcatgacggcc
cagggcaccacctttgagtcgatacccagctcatctccaaaagatgtgactgttgtaagc
aaagagaacaaacctcgcaccataattgtcaactggcagcctccttcagaagccaatgga
aaaatcactggctatataatctactacagtacagacgttaatgccgaggtccacgactgg
gtaatagaaccggtggtgggcaaccgcctgacgcaccagatccaggagctgaccctggac
accacctactacttcaagatccaggcccgaaactcaaaaggcatgggccccatgtctgag
gccgtgcagttccgcaccccaaagactgagtcctctgacaaaatggctaatgaccaagcc
tcaaatattccagcaaagccaggacctccccacccaaatataaacggcccttggacgcca
cttggtaaatcagacggcaacagtgaaaatcccatagttgtcattgtcatcattatctcg
gtgggagccttcatcatcatagtggtggtagtgggggctttcctgtgcacgcggcgcacc
acgtcccaccagaagaaaaagcgagctgcttcaaagtcctcgaacggctcccacaagtac
aagggcaactccaaagacctgaagccgcccgatctctggattcatcacgagcggctggag
ctgaaaccgatggacaagtcgccagatcccaaccctgtgatgaccgagacgcccatcccc
cgcacctcgcaggacatcactcccgccgaaagcagtctggagagcaacccccacctgcag
cagaggcgcaactcctaccgtgatggtgatggatcagtcaacaaaaacaactgcagaccc
tctctgattggctggtttccaccgtaccttttaggccacgaatcagaggacagcttgtct
acactagcaggccgccgagggatgaggcctaaaatgatgatgccttttgacgcacagccg
cctcagcctgtgattagcgctcaccccatccattcccttgataaccatcatcaccattat
cacatgggcagtttggcatcaccaacgcgcggctacctctaccaccagggcagcgggcac
ctacgctcgcacacctgcaccccgctctcccatctagacagggtggactccacagagtcg
gtgaggaacacccccagctcggagccccttcctcccgccgccgcctcctcccaggcctcc
tgcccctccgagatcctggccgaccctgaaggcagctaccacggctccaccaccacggag
gaggaggccagctactccagcaacctgcccccgcaccgctcggcccacccgcacgcccac
gcccacccgctcaagagcttcgccgttcctgccatcccagtctccggccatccgtcgtac
gagtcccccgccctgcccagcacgcccctgctcgcccagacaggggctcccactcatccc
cacgtcgtgaaaacagcctccattggaacgctaggaaggacacgaataccgatggtggtc
actgtgccgaacgcaccggacgtgccggagaccagcaggatgcttgaggacgtggacagc
gtgcttgcctccctcgccccatgcccctcccccgccccccgcagtaaccctgttcctctc
cctcagagctacgagcccgacgaactgaccgaggagatggcccacctcgagggcttgatg
aaggacctgaacgccatcaccaccgcgccgtga
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