Cololabis saira (Pacific saury): 133459395
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Entry
133459395 CDS
T09849
Symbol
scaf4a
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133459395 (scaf4a)
03041 Spliceosome [BR:
csai03041
]
133459395 (scaf4a)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133459395 (scaf4a)
Spliceosome [BR:
csai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
133459395 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
133459395
NCBI-ProteinID:
XP_061595271
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All DBs
Position
14:42927423..42951163
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AA seq
1155 aa
AA seq
DB search
MDAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGSDKDVFGPRFTKNITGTFQNLCLCPVEDRSKIVRVLNLWQKN
GVFRIEVIQPLLDMAAGSGSGAAALGADDEPGSPPPPAKEAVTAVTANSTTAAAPQLHNS
DALAAVAQLFTSSQGQQLQQMLQNFQQHQPLKPDSNAQPPPHAGPTPVQTAAGPGAAAPA
PAHLPSPQPPHQAPPTQTAQQKTAFDRTLLDRFDYDDEPEGEDARKEENSSQPPFLQQPG
GFPPNTEHFNLQMMNRTQDLSLQVPPNGQLQARGLLPGHNFPGVLPPVGLSLPGQMLPGP
TPGFPGGFQNQNQQDSSMDVDPSSRDSRLGPPSDSGSRSPKRRRSRSNSRSRRSRHRRSR
SRSRDRDRDRDRDRDRRHHSPRSLDRREREKERERRQKGLPPPKNQTLSVCSTTLWVGQL
DKRTQQQDVASLLEEFGQIDSINMIPPRGCAYIVMIQRQDAFRALQKLSRGSYKVNQKNI
KIAWALNKGIKPEFKQFWEVELGVTYIPWAKVRDDQLEELQEGGMLDGDTLSPDWSAARK
SLDRPEEPTHNGRAEQQSEEMLPGGPAAAAPPVQVPPLQQPMGVGSLQPPVFPGPMGMPP
PSFTPGLPPPPFIRPGFNPMQMPPGFPPPGSMPLGPPPPPKVGVDDPSELGGPNRNNEDL
EGPNMFSSQMGPMGNQVGHPGAPPGLPGSIPPPPGGLLGARPGVIPLQRPPVPPPHMQRF
PPPHGPRPPHPNMPPNMPPMMPRGPHPQMMHQEPKGGFGMPPPHNLRGPFPHGHGPPHQG
QGPPHQGQGPPHQGQGPPHQGLLPPQGPPPAPFIRPGAPRGPDPPEEMEERPFRAERPGF
RDPERDRDWDRSRDRDRDRDRGFGGGRRPPFGEKPDRLGDWQEENRGGGGGGGWDRDRDR
DRDRRDWRERRASLDRDRGDRGDRDRGGRDDRGGPGPARRGEGGGPAPPAPAXPPRRPER
RERATRWDKDDRLAELENLENRISRTPGSSSQEAPPLAANATATANATANATATAAPAAT
TVAAAAGAAVTGKEPDAGAPPAQSTAVTAVTDSEHSAPPPETSPAPSEPVPPVPVPAAQK
ETDAADEAKPDPAAS
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggtcaacgccttcaaccaggagctcttctccctcatggactccaagcctccc
atctctcgggccaagatgatctccatcaccaagtcggccatcaaggccatgaagctctac
aagcacgtggtccagatcgtggagaagttcatcaaaaagtgtaagccggagtacaaggta
gccggcctgtacgtggtcgactccatcgtgcgtcagtcccgtcaccagtttggttctgac
aaggacgtgtttgggccgcgcttcaccaagaacatcacaggaaccttccagaacctgtgc
ctgtgccccgtggaggaccggagcaagatcgtgcgggtgctgaacctgtggcagaagaac
ggcgtgttccggatcgaggtgatccagccgctgctggacatggcggccgggtcgggcagc
ggcgccgcggcgctgggagccgacgacgagcccggttctccgccgcctccggccaaagag
gcggttaccgcggtaacggccaactccaccacggcggcggcgcctcagctgcacaactcc
gacgccctggcggctgtagcccaactcttcacgtcctcgcagggccagcagctccagcag
atgctccagaacttccagcagcatcagccgctgaagcccgactccaacgctcagcctccc
cctcacgccggcccgacgccggtccagacggccgccggcccgggagcagcggcgccggcg
ccggcccatctgccctcaccgcagcccccccaccaagccccgcccactcagacggcccag
cagaagacggccttcgacaggacgctgctggaccgcttcgactacgacgacgagccggag
ggagaagacgccaggaaggaggagaactcctcacagccgcccttcttgcagcagccgggc
ggcttccccccgaacacggagcacttcaacctgcagatgatgaaccgaacacaagacctt
tctctgcaggttcctcccaacggccagctccaggcccgcgggctgctgccggggcacaac
ttcccgggggttctgccccccgtgggcctctctctgccgggccagatgctgcccgggccc
acgccggggttcccagggggcttccagaaccagaaccagcaggactcgtcgatggacgtg
gacccgtcctcccgggactcccggctcggcccgccgtccgactccggctccaggtctccg
aagaggcggaggtcgcgatccaactcccgctcgcggcgctccaggcaccggaggtcgcgc
tcgcgctcccgggaccgagaccgagacagagaccgggaccgggaccggcggcaccactcg
ccgcgctcgctcgaccgccgggagagagaaaaggagagggagaggcggcagaaaggcctg
ccgccgcccaagaaccagacgctgagcgtgtgcagcaccaccctgtgggtcggccagttg
gacaagagaacgcagcagcaggacgtggcgtctctgctggaggagttcggacagatcgac
tccatcaacatgatcccgccgcgcggctgcgcctacatcgtgatgatccagcggcaggac
gccttcagggcgctgcagaaactcagccgcggctcctacaaggtcaaccagaagaacatc
aagatcgcctgggcgctgaacaagggcatcaagccggagttcaagcagttctgggaggtg
gagctgggcgtcacctacatcccctgggccaaggtccgggacgaccagctggaggagctg
caggagggcgggatgctggacggagacacgctatcaccggactggagcgcggcgaggaag
agcctggaccggcccgaggagccgacccacaacggccgggcggagcagcagtcggaggag
atgctgccgggcggccctgcggccgccgccccacctgtgcaggttcctcccctgcagcag
ccgatgggcgtgggttccctccaacccccggtgttccctggtcccatggggatgcccccc
ccctccttcacgccggggctgcccccccctcccttcatccggccgggcttcaaccccatg
cagatgcctccagggttcccccccccaggatcgatgcccctcggccccccccctcctccc
aaggtcggggtggacgacccgtctgagctcggaggcccaaacaggaacaacgaagacctg
gaaggtccaaacatgttcagcagccagatgggacccatgggtaaccaggttggacatcct
ggcgccccccccggtcttccagggagcatcccgcccccccccgggggcctgctgggggcc
cggcccggcgtgatccccctgcagcgtcctccggtgccgccgcctcacatgcagcggttc
ccgcccccccacggcccccggcccccccaccccaacatgccccccaacatgccccccatg
atgccccgaggcccccacccccagatgatgcaccaggagcccaagggcggcttcggcatg
ccccccccacacaacctgagggggcccttccctcacgggcacggccccccccaccagggc
cagggccccccccaccagggccagggcccgccccaccagggccagggcccgccccaccag
ggcctgctgcccccccagggccccccgcctgccccgttcatcaggccgggggccccccgg
ggcccggacccccccgaggagatggaggagcggcccttcagggccgagagacccgggttc
agggacccggagagagaccgggactgggaccggagcagggaccgggaccgagaccgggac
cggggcttcgggggggggcggcggccccccttcggggagaaaccggaccggctcggggac
tggcaggaggagaaccggggcggaggaggaggaggggggtgggaccgggaccgggaccga
gaccgggaccggcgggactggagggagagacgggccagtctggaccgggaccggggagac
cggggggaccgggaccgggggggccgggacgaccggggggggccgggcccggcccgacga
ggggaaggcgggggaccggcccctcccgcccccgccnngccgccccggcggcccgagcgc
cgcgagcgggcgacccgctgggacaaggacgaccgtctggccgagctggagaacctggag
aaccggatctcccggactcccggcagcagcagccaggaggcgccgccgttagcggctaat
gctacggctaccgctaatgctaccgctaacgctacggctaccgcggctccagctgctacc
acggttgccgcggcagcgggagccgcggtaacggggaaggagccagacgctggagcgccg
ccggcccaaagcaccgcggtaaccgcggtaacggactctgaacactcggccccgccccca
gagacgagccccgccccctccgaaccggttccgccggttccggttccggcggcccagaaa
gagaccgacgccgccgacgaggccaaaccggacccggcggcgtcgtag
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