Cololabis saira (Pacific saury): 133459439
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Entry
133459439 CDS
T09849
Name
(RefSeq) exosome complex component RRP43-like isoform X1
KO
K12586
exosome complex component RRP43
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133459439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133459439
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133459439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133459439
NCBI-ProteinID:
XP_061595344
LinkDB
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Position
14:complement(1018805..1025231)
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AA seq
277 aa
AA seq
DB search
MAAGFKTAEPLEYHRSFLKENCRPDGRELSEFRTTTLNIGSISTADGSALVKMGNTTIIC
GIKAELANPTVEAPAKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFVADVIESSEVIK
AEDLCIDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTRLPEITINKDTCAPEVN
LKVRHGLHVHKHPVGTSFCVFDDSILIVDPTAEEERLATAQLSVVTDEEGRLCAVHKPGG
VSLSAEKLQDCISRATLRQKEIQKLIDKVVNSVTTAQ
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggtttcaagactgcggagcctctggagtatcacaggagttttctgaaagaa
aactgccgaccagatggacgggagctgtctgaattccgaaccacaactctgaacataggg
tccatatccaccgctgatggctcagccttggtgaagatgggaaacaccaccatcatctgt
ggcatcaaagcggagctggcaaaccctacagtggaggcacctgctaaaggttacattgtg
cccaacgtggacctgccgccgttgtgttcgtcgcggttccggcccggccctccgggagaa
caggcccaggccgccagccagttcgtcgctgacgtcattgaaagctcagaggtgattaag
gcggaggacctgtgcatcgacagggggaagctctgctgggtgctctactgtgacatcatg
tgtctcgactatgatgggaacatcctggatgcttgtatcatcgccctgctggctgctctc
aagaacacacgactgccagaaatcaccatcaacaaagacacatgtgcaccagaggtgaat
ttgaaagtgagacacgggctgcatgttcacaagcatccggttgggacctctttttgtgtc
tttgatgactccatactgatcgtagaccccacggcggaggaagagcgcctggccaccgcg
cagctctccgtggtgacggacgaggagggccgactctgcgctgtacacaaaccaggtggc
gtttcgctgtcggcggagaagctgcaggactgcatcagccgagcaacgctacgacagaaa
gagatccagaaactcatcgacaaagttgtaaacagtgtcacaacagcacaataa
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