Cololabis saira (Pacific saury): 133459754
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Entry
133459754 CDS
T09849
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133459754 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csai01009
]
133459754 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133459754 (pcdh1a)
Protein phosphatases and associated proteins [BR:
csai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133459754 (pcdh1a)
Cell adhesion molecules [BR:
csai04515
]
Cadherins
Protocadherins
133459754 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Syndecan
Motif
Other DBs
NCBI-GeneID:
133459754
NCBI-ProteinID:
XP_061596008
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All DBs
Position
14:complement(18143059..18244548)
Genome browser
AA seq
1190 aa
AA seq
DB search
MEQNLRVVVFWVVVLHCGSAEGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLKDCRSLAKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSDRNGVADYALTAGLDAATL
FGLQVADDRGGKLPQLIVLGNLDRESKDSYELTIKAVDGGNPQRYSSALLRVLVTDANDN
PPKFEKSSYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQAVDPVPKLLRIDRST
GIIYVKGPLDREEISSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSTSDNKRKY
FLQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPIFSPTLFEVDFA
EENQPGEKVLDVTASDADSGTNAELLYNILADSSIKGLFEIDPNTGEVKARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVVKVLDCNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDMDKGDNAHVHLSVEPDGGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVITKPSNSSFRGLSPVASPDSHVEIVEAEDLDSGPNAELVFSI
AGGNPYQLFRISPTSGEITLAKEMTRKHGGLHRLVVRVSDRGKPSRHATALVHIYVNETI
SNVSLVEGLVGHSLYTPLDRDIAGDPESGFAAQRSNILFGSLAGVAGVVMLILVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQAPKNAKSKRGRKGKPQKSPKPLGEEEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAT
NTFVGTGGDDNSTGSDQYSDYSYKTSQPKYNNKQHPHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSIPDVAMTGN
CTTECSELGHSDACWMPGHPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARMGGEEHR
PRLPPSRSAYSNSGNDASQDCPLEEMPLSVASEFQPMSPSAQTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacttacgagttgtagtgttttgggtcgtggtgctgcactgtggctctgct
gaaggcagtatcctctaccgagtccaggaggagcagccccccaacactctcattggtagc
ctggcagcagaccaaggcctgccagattcaggtcacctctacaagttagaggtaggtgcc
ccttatcttcgtgtcgatggaaagacgggagacattttcaccacagagattccgatagac
agagagaccttgaaggactgtcggtccctcgctaaggggaagccatgctacctggaattt
gaagtatcggtgacagatctgatacaaaaccagagcccacgactcattgaaggacgcatc
gaagtacaggacatcaatgacaacaccccgcaatttccctcttctgtgctcaccatctcg
gtgcctgagaacacaatcatgggggcattattctctatacctcttgccacagacagggac
tcagacagaaatggggtggctgactatgcgctgactgcggggctagatgcagcaacccta
tttggtttacaagtggctgatgacaggggagggaagctcccacagctcattgtccttgga
aacctagatcgtgagtcaaaggattcttatgaactcaccatcaaggcggtggatggaggg
aaccctcagcgctacagcagtgctttgcttcgagtgttagtgactgatgccaatgacaac
cctcccaaatttgaaaagtcttcatatgaggcagaagtttcagaaaatagtccagtaggg
cattctgtgttgcaggtcaaagcaaatgactctgacatgggccctaatggagaaattgaa
tacactcttcaccaagcggtagacccagtgccgaaactcttacgaattgatcggtccact
ggcattatttatgtcaaagggcctctagacagggaggaaataagcagcttgtccttctac
gtggtggcaagggataagggtcctcaacctaaaagctctaagacgtttgtaaccattgag
gtgactgatcagaatgacaacgctccagctgtggagattcgtgggattggtcttgttact
cacagtgaaggagtggctaatatttcagaggacatgccagtggggacagctgttgctttg
gtgcaggtgtctgacaaagacgaaggagagaatgccgtggtcacctgtgttgtggcagga
gatgtcccctttcagcttcgccctgccagtgactccaccagtgacaacaagaggaaatat
ttcttacaaaccaccactcctctagactatgaaagagtcagggattatagagtagagatc
gtagctgtggattctggaaacccagccctctctagcacaaactctttaaaggtgcaggtg
actgatgtgaatgataattcaccaatattttccccaacattatttgaggttgattttgct
gaggaaaaccaaccaggagagaaggttttggatgttactgcttccgatgctgacagtggc
actaatgccgagctcctgtataatattttggcagactcatctatcaaaggtttgtttgag
attgacccaaacacaggtgaagtaaaagcacggagcccccttgatcgtgaacataaggaa
cggtatgagtttcgggtcactgcagcggacaaaggctcacctgttcataagggaacagca
actgttgtagtaaaagtccttgactgcaatgacaatgaccccaagttcatgctaagtggc
tacagcttttctgttctggaaaacatgcctccactaagtccagttggtatggtgaccgtc
ctggatatggacaaaggtgataatgctcatgttcacctgtctgtagaacctgatggaggg
aagttcgtcattcaaaatggaacagggactatcctctcaagcatctcatttgatagagag
aaagaaagcagttacacattccgtctcaaagctgtagatgggggagaaccacccagatct
tcatatgtgggcgtaaccatcaacgtgctggatgaaaatgacaatgatcccgtcattact
aaaccctccaactcctccttcaggggcttgtcacctgtagcttccccagatagccatgtt
gaaatagtggaggctgaagacctggacagtgggcctaatgcagagttggtcttcagtatt
gctggaggaaacccttaccagttatttcgcatctcccccaccagtggagagatcactctg
gcaaaagagatgacccgcaaacatggtggtctacatcgtctggtggttcgagtgagtgac
agggggaaaccctcacgccatgccactgccctagttcacatatatgtcaatgagaccatt
tcaaatgtcagcttagtggaaggtttagttggacacagtctttacactccacttgacaga
gatattgctggtgatcctgaaagtggttttgcggcacagcgcagtaacattctatttgga
agccttgctggcgtggcaggggtcgtaatgttgatcttggtggtggtgtttattcgacac
cgtatccaaagagaaacaaaaagtggctatcaagctggcaaaaaagaaacaaaggactta
tatgcacccaagcaggcaccaaagaatgccaaaagcaaacgaggaagaaaaggtaaaccc
cagaagtccccaaaaccactcggggaggaggaagaggtcagccttcaaaaaagtctgaag
tttaaccttgatggagtcaatgatagccccaggatacatctgcccttaacatattcacca
ggaagccctgatataggtaggcattaccgctccaactcccctttaccctccatccagctg
caagcccagtcaccttctgcatctcagaagcaccaggctgtccaggaccttcctgccact
aacacttttgttggaaccggaggagatgacaactctaccggctcagaccagtactctgat
tacagctacaagaccagccagccaaagtacaacaacaaacagcatccccatcgtcgagtg
accttttccaccgccaaccccgtgcaggacctgcaggatgcttctcagcacagctattat
gacagcggcttggaggaatcggagacccccagcagtaagtcatcgtccggtcctcgcatt
ggacccctgaccctgcccgaagaccactacgagagaaccactccagatggcagcatcggg
gaaaccgaacacccagaaaatgacatccgctccatccctgacgtggcgatgactggaaac
tgtacgaccgagtgcagcgagctgggccactcagatgcctgctggatgcccggccatccc
tcccccgtccgcaagaccaggaacccaccgaagctctccaccttcgtgccttaccaggag
agagggagcctgggacgcctggcgaacgggagtgccagaatgggcggcgaggagcaccgg
ccgcgactcccgccctcccgcagtgcctactccaacagtggcaatgatgccagtcaggac
tgccccttagaggagatgcccctgagcgtggcctctgagttccaacccatgtccccctct
gcccaaactcccaaacgtgaaatttacctgtga
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