Cololabis saira (Pacific saury): 133460094
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Entry
133460094 CDS
T09849
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csai03009
]
133460094
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133460094
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
90S particles
Helicases
133460094
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Ribosomal_S7e
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133460094
NCBI-ProteinID:
XP_061596604
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All DBs
Position
14:complement(40541429..40557989)
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AA seq
669 aa
AA seq
DB search
MDAFDLFRKLGAGAKFDLKRFGEDAARFKVARSRAGEDSSEQLSAIDYFGSGETSGAQSG
EEEEEEEEDGGGRGDSGGKRTCKEEKAAKRKKKKAKRSELASEDGLMKESEGNGITWMSS
LDRKIQNLQSEDKSSLKKLKHLHQEKINSIRSQHRINVHGCDVPDPVCSFEELQSEYCLN
PNILHNLVDAGLKSPTPIQMQAIPLMMHSRELLACAPTGSGKTLAFCVPLLSHLKQPANH
GFRAVIISPTRELASQTYRELLRFSEGVGFRIHILDKASLAAKKYGPKSNKKYDILVTTP
NRLVFLLKQDPPAIDLSRVEWLVVDESDKLFEDGKRGFREQLATVFLACSNPKVRRAFFS
ATCTPQVEQWCRLNLDSLVSVNIGSRNSAVNTVEQELLFVGTESGKLVAMRDIVRKGFLP
PVLVFVQSIDRARELFHELVYEGINVEVIHADRTQQQRDNVVNSFRSGKIWVLICTALMA
RGIDFKGVNLVLNYDFPTSAVEYIHRIGRTGRAGHQGKAITFFTESDKPMLRSIANVIKQ
AGCPVPDYMIGFKKIHSKVKRRLEKKPPKRSTICTTPRFMMKKKGNAQKKEQQQESPRKQ
NEEKEPQTAISQQKGGKRKEGHGLKKKSKPSDTGVKIPKESNSSGAKLKKNLKKKNKLKG
DLKTSMETG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggacgccttcgacctgtttcgaaaactcggagccggagccaaattcgacctgaagaga
ttcggcgaagacgcagctcggtttaaggtggccagatctcgggcaggggaagactcctcg
gagcagctctctgccatcgattacttcggctcaggggagactagtggagcccagagcgga
gaggaggaggaggaggaggaggaggatgggggaggaagaggagactctggagggaagaga
acgtgcaaagaagagaaagctgcaaagcggaaaaagaaaaaggcaaaaaggagcgagttg
gcctcagaagacggactgatgaaggagagcgagggaaacggcatcacatggatgtcttcg
ctggacagaaagatccaaaacctgcagagtgaagacaagtcgtcactgaagaagctgaag
catcttcatcaggagaagattaattccatccgctctcaacatcgcataaacgtgcacggc
tgtgacgtgccggaccccgtgtgctcgttcgaggagttgcagtcagaatattgtctcaac
ccgaacatccttcacaacctcgtagacgcaggactgaagtcgcccacgccgattcagatg
caggccattcctctcatgatgcacagtcgggagctcctggcctgtgctcccacaggatcc
ggaaagacgttggccttttgcgtgccgctgctcagccacctgaagcaaccggccaaccac
ggcttcagggccgtgatcatctcccccaccagagagctggccagccagacttacagggag
cttctccgcttctccgagggagtggggttcaggatccacatcctagacaaagcttctctg
gccgccaagaaatatggaccaaagtcgaacaaaaaatacgatattctggtgacgactccc
aacaggctggtgttcctgctgaagcaggaccccccggccatcgatctcagcagagttgag
tggctggtcgtagacgagtcggataagctgttcgaggacggtaagaggggcttcagggag
cagctggccaccgtgttcctggcctgctccaaccccaaggtgcgccgggctttcttcagc
gccacctgcaccccccaggtggagcagtggtgccgcctgaacctggacagcctggtctcc
gtgaacatcggaagcagaaactcggcggtgaacacggtggagcaggagctgctgttcgtc
gggacggagagcggcaagttggtggccatgagggacatcgtcaggaaggggttcctgcca
cccgtgctggtgttcgtccagtccatagaccgagcccgtgaactcttccacgagttggtg
tatgaagggatcaacgtggaggtgatccacgccgaccgcacgcagcagcagagggacaac
gtggtgaacagcttccgctccggaaagatctgggtgctgatttgcacggctttgatggcc
agagggatcgacttcaagggagtgaacctcgtgctgaactacgacttccccaccagcgcc
gtggagtacatccatcggattgggcgaactggcagagctggccatcaagggaaggccatc
accttcttcacggagagtgacaagccgatgttgcgcagcattgcaaatgtgataaaacaa
gcgggctgtcccgtcccggactacatgatcggcttcaagaagatccacagcaaagtaaag
cggaggctggagaagaaacctcccaagagaagcaccatttgcacaactcctcgcttcatg
atgaagaaaaagggcaacgcacagaaaaaagagcaacaacaggaatcgccgaggaagcag
aatgaagaaaaagaacctcaaacagcaatttcccagcagaaaggggggaagagaaaagaa
ggacacgggttaaagaaaaaaagcaaaccgagtgacacaggagtaaaaatacccaaggaa
tccaattcctcaggagctaaattaaaaaagaacttaaagaagaaaaacaaactaaaaggg
gacttgaagacgagcatggaaacaggctga
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