KEGG   Cololabis saira (Pacific saury): 133460455
Entry
133460455         CDS       T09849                                 
Name
(RefSeq) histone-binding protein RBBP4-like
  KO
K10752  histone-binding protein RBBP4
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03082  ATP-dependent chromatin remodeling
csai03083  Polycomb repressive complex
csai04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133460455
   03083 Polycomb repressive complex
    133460455
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    133460455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csai03036]
    133460455
Chromosome and associated proteins [BR:csai03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     133460455
  Histone modification proteins
   HAT complexes
    HATB complex
     133460455
   HDAC complexes
    Sin3A-HDAC complex
     133460455
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     133460455
    PRC2.2
     133460455
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     133460455
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133460455
  Chromatin remodeling factors
   NuRD complex
    133460455
   NuRF complex
    133460455
   NuRF complex (fruit fly)
    133460455
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EML Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 Beta-prop_WDR19_1st WD40_RFWD3 WD_LRWD1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_RIG_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_SPT8 MIOS_WD40 Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 133460455
NCBI-ProteinID: XP_061596995
LinkDB
Position
15:complement(18630770..18637295)
AA seq 425 aa
MADKEAGPYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGK
DYSVHRLVLGTHTSDEQNHLIIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIDI
KINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPEVSTECRPDLRLRGHQKE
GYGLSWNSNMSGFLLSASDDHTICLWDISGVPKESKIVDAKTIFTGHTAVVEDVSWHLLH
ESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVA
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDCRLNVWDLSKIGEEQSPEDA
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPEGTTD
PEATA
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcagacaaggaggccggcccatatgatgatgcggtggaagagagggttatcaacgag
gagtacaagatctggaagaaaaacaccccttttctgtatgacctggttatgacccatgct
ttagagtggcccagtctcactgctcagtggctgcctgacgtttctcgaccagaggggaag
gattacagcgtgcaccgattggtgttaggcactcacacgtctgatgagcagaatcacttg
attattgcaagcgtccagcttcccaatgatgacgcccagtttgatgcttcgcattatgac
agtgaaaaaggagaatttggaggctttggctcagtaagtgggaagattgagatagatatc
aagatcaaccatgaaggagaagtgaaccgtgctcgatacatgccccagaacccctgtatc
attgccactaagacccccacctcagatgtgctggtgtttgattataccaagcatccttcc
aagccagaggtttctacagaatgtcgcccagatttgcgactcagaggccatcagaaagaa
ggctatggtctgtcctggaattcaaacatgtcaggctttctgcttagcgcatcagatgac
catacgatctgtctgtgggacatcagtggtgtgcctaaggagagtaagatagttgatgcg
aagactatcttcactggtcacactgctgtggtggaagatgtctcatggcacctgcttcac
gagtcactctttggatctgtagcagacgaccaaaagcttatgatttgggatacccgctcc
aacaatacctccaaacctagtcatgcagtagatgcccacacagcagaggtcaactgtttg
tcgtttaacccttacagtgagttcattcttgccactggctcagcagacaagactgtagct
ctttgggacctgagaaatctgaaactgaagctacattcctttgagtcacacaaagatgag
atcttccaggttcagtggtcaccacataatgaaacgattctagcatccagtggcacagac
tgtcgcctcaatgtctgggacctcagcaaaattggagaagagcagtcacctgaggatgca
gaagatggtccacctgagctcttgttcattcatggaggccacacagccaagatatctgac
ttctcttggaaccccaatgagccttgggtcatctgctctgtgtctgaagataacatcatg
caagtctggcagatggctgagaacatttacaacgatgaagaacctgaaggcacaacagac
cctgaagctacagcgtaa

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