Cololabis saira (Pacific saury): 133460593
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Entry
133460593 CDS
T09849
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133460593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133460593
03036 Chromosome and associated proteins [BR:
csai03036
]
133460593
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133460593
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133460593
mRNA degradation factors
5'-3' decay
Decapping complex
133460593
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133460593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
133460593
NCBI-ProteinID:
XP_061597223
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All DBs
Position
15:complement(28763716..28778754)
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AA seq
485 aa
AA seq
DB search
MATARTESAGPVVMALGKQNGQLRGQSKPASVLGAPTSQGKGLGAPQKVGGAPQDGGGIK
FGDDWKKSLQLPPKDTRVRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQICIQI
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDRVMMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHSGSDGDIEEKPGR
PQDSA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgccagaacggaaagcgccggccccgtcgtcatggcgctgggtaaacagaac
gggcagctccgaggacagagtaaacccgcctcggtcctgggggcgcccacctctcaaggg
aagggtctgggcgccccccagaaagtgggcggcgcccctcaggacgggggaggaatcaag
ttcggagacgactggaaaaagagcctacagctcccccccaaagacactagggtccgaacc
tcggatgtcacggccaccaaggggaacgagtttgaagattactgtctgaaaagggaactc
ctgatgggcatctttgagatgggctgggagaaaccttcaccgatccaggaggagagcatc
cccatcgcgctgtctgggcgggacatcctggctcgggccaagaacgggacggggaaaagt
ggcgcctatctcatcccgctgctggagaggatagacctgaagaaggaccacatacaggcc
atggtcatggtgcccacgcgggagctggcgctgcaggtgagccagatctgcatccagatc
agcaaacacctgggaggggtgaaggtcatggccaccactggcggcaccaacctgcgggat
gacatcatgcgcctggatgagatcgtgcacgtggtcatcgccacccccggcaggatcctg
gacctgatcaagaagggcgtcgccaaggtggaccgagtcatgatgatggtgatggacgag
gcggataaactgctctctcaggacttcgtggtgctcatcgaggacatcatcagcttcctg
gccaagaaccggcagatcctgctctactctgcaaccttccccatcagcgttcagaagttc
atggccaagcaccttcagaaaccctacgagatcaacctgatggaggagctgactctgaag
ggcattactcagtactacgcctacgtcaccgagcggcagaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccaatcaatcattttctgtaactccacccagagggtg
gagctcttggccaaaaagatcacccagctgggctactcctgtttctacatccatgccaag
atgatgcaggaatacagaaaccgcgtttttcacgacttcagaaatggtctctgcagaaac
ctcgtctgcaccgatctcttcaccagaggaatcgacatccaggctgtgaatgtggtcatc
aacttcgacttccccaagaacgcagagacgtacctgcatcgcatcgggagatcagggagg
ttcggtcacctgggcctggccataaacctgatcacgtcggaggaccgtttcaacctgaag
gccatcgaggaccagctggtgaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccactcgggctccgacggcgacatcgaggagaagccgggtcgc
ccgcaggacagcgcctaa
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