Cololabis saira (Pacific saury): 133460920
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Entry
133460920 CDS
T09849
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133460920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133460920
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133460920
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133460920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
133460920
NCBI-ProteinID:
XP_061597617
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All DBs
Position
15:37604663..37661578
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AA seq
893 aa
AA seq
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MTTKLQAKHASCTQTPSSASMTLGDESPHRLRDQIKTWVASNEIKDKRQLVDNRKLIETQ
MERFKIVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGTWLTNTIDTLNMQVDQFESEVE
SLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHILMLETILRMLDNDSVQVDAIRKIKEDV
EYYIDSSQDPDFEENEFLYDDLDLEDIPQSLVATSPPGHSHLEDEIFQNSSSTPTSTTSS
SPIPPSPATCTAENSEDDKKRGRSTDSEVSQSPVKNGNPSSSLSSSSCSSSSSSSVSGLT
ASSLVSMATIAVGGGGSSITVGGNSHHMSSSGGLLSNSLAGSYSNATQQPPHPSAQQQAK
NSAGSSSLVPLSISSISTHGLIASSAPSPPNAGTQGLFTSNSPSQALPMPVVSSNSLGLG
LGLPLGKGGSLGSSMSGSLGLSGMPASLNLLSSGSTSAPYAQAAASGTGSNSGLPGSLGG
VSTAPSQSTAGAIGSGSMTVGGPTSSSGGLLGSSTGMGSPGLVSLVSAQAGLQGSSSLMS
PGSMGGLAPGSGVGVIGSNSGSSGSAGSSGVLGGNASLSVRPPSRQKQNGSSSYSAVVAD
SPADSALISASQSQSSQPSSLTITGNQPKDSGLSLLGSLSLSSSSPSPASYSEAKMVSSG
SLLNGPLSYSQPADKPQEPLSSLKAMAERAPLSSGIEGDMSSLHLTPDIFPSSTTTPSGP
PSAPQLSLSEVSIAPSLGVCPLGPVPLSKDQLYQQAMQEAAWTHMPHPSDSERIRQYLMR
NPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHT
KYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaaactccaagccaagcacgcgtcctgcacgcagacaccaagttcagcatcc
atgactctgggagacgagtctccgcatcgtcttcgagaccagatcaagacgtgggtggca
tccaacgagatcaaagacaaaaggcagctagtagacaaccgaaaactcatagaaacgcaa
atggagcggttcaagatcgtggaaagagaaaccaagacgaaagcgtactctaaagaaggg
ctgggtctggcccagaaagtggatccggcccagaaggagaaggaggaggtcggcacgtgg
ttaacgaacacgatagacacattgaacatgcaggtggaccagtttgaaagcgaggtggag
tctctgtcggtccagacaagaaaaaagaaaggagacaaagagaaacaggaccggattgaa
gagctgaagaagtttatagaaaagcaccgctaccacatcctgatgctggagacgatactg
aggatgctggacaacgactcggtgcaggtcgacgccatcagaaaaatcaaggaggacgta
gagtactacatagactcgtcgcaggatccggactttgaggaaaatgagttcctttacgac
gacctggacctggaagacattcctcagtcgctggtcgccacgtccccgccgggacactcg
cacttggaggacgagatcttccagaactccagcagcacgcccacgtccaccacctcgtcc
tcccccatccccccgtctcccgccacatgcactgcagagaactcagaagacgacaagaag
aggggacgatcaacagacagtgaagttagtcagtcgcctgtgaagaacggaaatccctcc
tcttcgttatcctcttcttcctgttcctcctcttcttcctcttccgtgtcgggactgacg
gcgtcgtcgttggtctccatggcgaccatcgccgtgggaggaggcggcagcagcatcacc
gtcgggggcaacagccatcacatgagcagctcgggcggcctcctctccaactctctggcc
ggcagctacagcaacgccacgcagcagccgcctcacccctccgcgcagcagcaggccaaa
aactccgcgggctcctcctccctggtccccctctccatctccagcatctccacgcacggc
ctcatcgcgtcctcggcgccgtctccgcccaacgccggcacgcaggggctgttcacctcc
aactccccgtcccaggccctgcccatgcccgtggtctcctccaacagcctgggcctgggc
ctaggcctgcccctggggaagggcggctccctcggcagctccatgtccgggagcctcggc
ctgtcagggatgccggcgtccctgaacctcctctcctcaggctccacctcggctccctac
gctcaggcggccgcctccggcacgggcagcaactcaggcttaccgggctccctgggcggc
gtcagcacggcgccgtcccagagcacggccggcgccatcggcagcggcagcatgaccgtc
ggcgggccgacgtcgtcctccggaggtctgctgggctccagcacggggatgggcagcccg
ggcctcgtgagcctggtctccgctcaggccgggctgcagggatcctcctccctgatgtcg
cccggctccatgggaggtttggctccgggcagcggcgtgggcgtcatcggcagcaacagc
ggcagctcggggtcggcggggagtagcggagtcttgggaggaaacgcatcgctctccgtt
cgaccgccgagccggcagaagcagaacggaagctccagttacagtgccgtggtggcagac
agtcctgcagactccgccctcatcagtgccagccaatcacagagcagccagccctcatct
ctgaccatcacgggcaatcagccaaaagacagtggtctgagtttactgggctcgttgagt
ttgtcgtccagctctccgtctccggcctcctacagcgaggccaagatggtgagcagcggc
agcctgctgaacggaccgctgtcgtactcgcagcccgccgacaagccccaggagccgctg
agcagcctgaaggccatggccgagcgagctcctctcagctcagggatcgagggagacatg
tcctccctgcacctaacgccagacatcttccctagcagcactacgaccccctcaggtcct
ccatcagccccgcagctctctctgtcggaggtcagcatcgccccgtccctgggcgtctgt
ccgctggggccggtccccctctccaaagaccagctctaccagcaggccatgcaggaggcg
gcgtggacgcacatgccccacccgtccgactctgagagaatcaggcagtacctgatgagg
aacccgtgccccaccctgcctttccaccaccaggtgccgcctccccactctgacactgta
gagttttaccagagactttccacggaaacgctcttcttcatcttttactacctggagggc
acgaaggcccagtatctggcagccaaagccctgaagaagcagtcttggaggttccacacc
aagtacatgatgtggttccagcggcacgaagagcccaagaccatcacggacgagtttgag
caggggacgtacatttacttcgactatgagaagtggggccagcggaagaaggagggcttc
acgtttgagtaccggtacctggaggaccgagacctccagtga
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