Cololabis saira (Pacific saury): 133460968
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Entry
133460968 CDS
T09849
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
csai
Cololabis saira (Pacific saury)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
133460968
NCBI-ProteinID:
XP_061597662
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Position
15:44216479..44317023
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AA seq
1623 aa
AA seq
DB search
MEVRLGFRISLLWFILASTLSSKKVEAQRAGCKNVHYDLAFILDTSSSVGKENFDKIRQW
VSNLVDSFDVAPDKTRVAVVRYSDRPTIEFNLERYRTLEDVKAAARNIRYLGGNTMTGDA
IAYTATNIFTERNGARPVARGIQRVAILLTDGRSQDYVLEPSKAAAAAKIRMFAVGIGEA
LKEELDEIGAEPKNAHVFHVTDFDAIDRIRGRLRRRLCENVLCPEMKVEPDRFQANSSIH
GLQQVPGFDLMDHFSVKDILGTRLDDGQSSYVRLGTMPIVQQTEHVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQIYDKYGIPQVSIRLDGENKAVEYNAVGLTQDAVRAVFKSPEVDN
LFDRSWHKIALSVGAKSVSLYLDCKLIATKTIGEREDIDVQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELEACCDIPGGPCPFKVVTEAPVPIPTSTPTPAAVEQQRGKHTNCSCP
AGEKGDLGGPGVAGPKGEKGNVGSKGSLGPRGVKGERGDSGKLGSVKGDRGEKGDSGSIG
LPGAPGPSGEKGVGGIPGIDGLSGDKGDPGAGGVAGAPGVRGQAGLKGIQGDVGVPGAPG
PKGVSGDSGEKGAKGAPGTRGEEGLEGIPGKPGVPGKEGARGLVGASGPSGFKGDKGEQG
LPGLPGDAAQWAGVRGDKGEGGLPGPPGRDGAPGPPGTPGMQGLPGEMGENGQRGKKGES
GLPGVDGLPGPQGPQGPPGQQGLPGPIGQSGLPGELGFPGKMGEPGKPGVPGKDGLDGLP
GNDGAMGPRGERGTDGFPGKGGPKGDDGPPGPRGPPGERGLAGSPGQPGVDGARGDRGVG
GERGLQGSAGMKGDKGDQGDVGERGPPGIPGNVADVIPQPGEPGKTGEKGEKGDQGNPGE
MGSRGLPGEQGFRGQPGPLGPKGETGLSGETGRVGDPGPPGGAGLQGVRGLPGNVGIPGI
IGPPGPAGQRGDKGEAGKPGQSGPQGPAGEPGLTGPAGPTGKGKDGQNGDPGPQGIQGPP
GLKGPPGSHGQPGLPGDRGSAGEGKMGLPGTAGKPGQPGPVGLRGPPGVAGPQGPAGHNG
LPGRPGEKGSPGEPGKEADISNVNLKDICSDCPAGPPGPPGLPGIPGDKGLTGSAGKNGQ
DGYPGPVGLPGPQGPAGADGTKGVKGDQGPPGNSGDKGDKGHPGPPGNPGPAGLMGTPGN
DGRPGPLGPPGPPGEKGKEGLKGIQGPPGLPGLVGQPGKMGKDGRPGEQGESGKRGEPGP
PGNPGLRGLPGFKGHRGEPGPPGAQGGDGKPGSAGHDGKPGKEGPKGPAGPEGIMGPRGE
PGKQGEPGPSGKSGLPGTPGQWGDKGEPGSPGLPGFSGPKGPAGPPGPSGPEGKQGIPGR
QGDRGLKGDKGTAGTKGDKGHGGEPGMPGNPGPPGRKGHTGMMGMSGPQGEIGPTGAQGP
SGNPGLPGPRGESVSLEQMRRLIQEELSKQLDAKMAYLMSQIQPTSVKSTAGRPGPPGPQ
GKEGMPGRSGPPGEPGMPGQNGGEGPRGPLGPKGEKGTRGEKGDAGIGERGLQGPSGPIG
PAGLPGYGKDGSPGQGGAQGEPGNPGPHGQPGPPGPPGQCDPSQCAYYASLAQRPHTKNV
KGT
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggaggttcgactgggattccggatctcgttgctctggttcattctggcctcgactctg
tccagtaagaaggtggaagctcagagagcaggctgtaagaacgtccactacgacctggcc
ttcatcctggacacatcgtccagcgtggggaaggagaactttgataagatccgtcagtgg
gtttccaacctggtggactcgttcgacgtggcgccggacaagacgcgcgtagcggtggtt
cgttacagcgaccggccgaccatcgagttcaacctggagcgctaccgcacgctggaggac
gtgaaggcggcggcgcggaacatccgctacctgggcggcaacacgatgacgggcgacgcc
atcgcctacacggccaccaacatcttcacggagcggaacggcgctaggccggtggcgcgg
ggcatccagcgcgtggccatcctgctgacggacggacgcagccaggactacgtactggag
ccttccaaagccgccgccgccgctaagatccgcatgttcgccgtcggcatcggcgaggcg
ttgaaggaggagctggacgagatcggggctgagcccaagaacgctcacgtcttccacgtc
accgacttcgacgccatcgacaggatccggggccggctgaggaggaggctttgtgagaac
gtcttgtgtccagagatgaaggttgaacccgatcgattccaggccaacagcagcatccac
ggcctgcagcaggttccagggttcgacctgatggatcacttcagcgtgaaggacattctg
ggaactcgactggacgacggtcagagttcctacgttcgtctgggaaccatgcccatcgtg
cagcaaacagaacacgtgtttcctcagggtttaccggacgaatacgccttcgtgacgacg
ttcaagttcaggaaaacgtccagacgggaggattggtatctctggcagatctacgacaaa
tacgggattccacaggtgtccatccgtctggacggggagaacaaggcggtggagtacaac
gccgtgggcctcacccaggacgccgtcagggccgtgttcaagagtcccgaggtcgacaac
ctgttcgaccgatcctggcacaagatcgcgctgagcgtcggggccaagtcggtgtcgctg
tacctggactgcaaactcatcgctaccaaaaccatcggggaacgggaggacatcgacgtc
caggggaagacggtgatcgggaagaggctgtacgacagcgtccccatcgactttgacctc
cagaggatgatgatttactgtgattccaaacatgcagagctggaagcttgctgcgatatc
cctggtggaccgtgtcctttcaaagtggtgacggaggcccccgttccgattccgacctcc
accccgactccagcagccgtggagcagcagagaggaaaacacaccaactgttcctgcccc
gctggggagaagggagatctcggtggtccgggagtcgcggggccaaagggtgaaaagggt
aacgttggctctaaaggttccctcggaccgcgaggcgtcaaaggagaaagaggggattct
ggcaagttaggctctgtcaaaggcgacagaggcgagaagggtgatagcggcagcataggc
ttgcccggtgctccgggaccgagcggagagaagggtgttggtggaattcctggtatcgat
ggcttatctggagacaaaggagatccgggagcaggaggcgtcgctggagctccgggagta
cgaggtcaggcgggactaaagggaatccaaggagacgtgggagttcccggagcgcccgga
ccaaaaggagttagcggggattctggtgaaaaaggtgcaaagggagctccaggaaccagg
ggcgaggaaggtctggagggaattccaggaaaacccggagttcctgggaaagaaggagcc
cggggtctggttggagccagcgggcccagcggattcaaaggagacaagggcgagcaagga
cttcctggattacctggagatgcggctcaatgggcaggcgttcgcggtgacaagggtgag
ggtggactccctggacctcctggaagagacggagctcctggacctccgggaactcctggg
atgcaaggacttccaggggagatgggagagaacggccaacgggggaagaaaggtgaaagt
ggactccctggagtggacggccttcctggacctcaaggtccccagggccccccggggcag
cagggcctgccgggaccgatcggacagtcgggtcttcctggagaacttgggtttccagga
aagatgggggaaccaggaaaacctggagttcctggtaaagacggtttggacggacttcct
gggaacgacggagccatgggaccgaggggagaacgggggacagacgggtttcctggtaaa
ggaggaccaaagggcgacgacggacctccaggaccacgaggacctcccggagagagagga
ttggctggttctcctggacaacccggtgttgacggagcgagaggagacagaggagtcggg
ggagaacgaggcctgcaaggatccgctggtatgaagggagacaagggagaccagggggat
gttggagaacgaggaccacctgggattccaggaaatgttgcagacgtcatccctcaaccc
ggggaacctggaaaaactggagagaagggagagaagggcgatcaagggaatccaggagag
atgggttccagaggtttacctggagaacaaggtttcaggggacaaccagggccgctgggg
ccgaaaggagaaacgggactttccggagagacgggtcgcgttggagacccgggtccaccg
gggggcgctggtctccagggagtccggggtttaccaggaaacgtgggaattccaggaatc
attggacctcctggtcctgctggacaacgaggggacaagggcgaggctggaaaacctgga
caatctggaccccaaggcccggctggagagcccggtttgactggacctgcaggaccaact
gggaaaggaaaagacggacaaaacggagatccaggacctcaggggattcaaggacctcca
ggactcaagggtcctccggggtcacatggtcagcccggtttaccgggagaccgcggttct
gcaggagaagggaagatgggattaccgggaactgcagggaaaccaggacaaccaggacca
gtgggtttgagaggtcctcctggagtggctggtcctcaaggccctgcaggacacaacggc
ctcccaggacgaccgggggagaagggatcacctggagaaccgggaaaggaagccgacatt
tctaacgtcaatctgaaggatatctgctcagactgtcctgccggtcctcctggacctcct
ggacttcctggaatcccaggagataaaggactgacgggatcggccgggaaaaacggccag
gatggatatccgggcccggttggactccctggacctcaaggacccgctggagctgacgga
acaaagggagttaaaggagatcaaggacctcctggaaactctggagacaagggagataag
ggccacccggggccccctggaaacccaggccctgctggactcatgggaacccccggaaac
gatggacgtccggggcctctgggccccccaggcccccccggagaaaagggcaaagaaggt
ctgaagggaatccagggaccgccgggtcttcctggtctggtaggccagcctggaaaaatg
ggaaaagacggtcgaccaggagaacagggagaatctggcaagcgaggagaacctggacct
ccgggaaaccctggcctccggggactcccaggtttcaaaggccaccgaggagaaccagga
ccccccggagctcagggaggagacggaaaacctggatcagcgggacacgatggtaaaccg
gggaaggagggccctaaaggacctgcaggtccagaaggaatcatgggaccacgaggagaa
ccgggaaaacagggagaaccaggaccgtcggggaaatccggtctccctggaactccgggt
cagtggggggacaagggagagcccggtagtcccgggttaccgggattcagcgggcccaag
ggccccgcgggtccaccaggtcctagcggaccggagggtaaacagggaattccaggcaga
caaggcgaccgcggcctcaaaggagataagggaaccgcaggtacgaagggagataaagga
cacggtggagagcccggtatgcccggaaaccccggccccccgggcaggaagggccacacg
gggatgatgggaatgtcggggccccaaggagagatcggccctacgggggcccaaggaccc
tccgggaacccgggtctgcccggccccaggggggagtcggtgtcgctggagcagatgagg
cggctcatccaggaagaactgtcgaaacaattagacgccaagatggcgtacctcatgtcc
cagatccagcccactagcgtgaagagcacggcgggccgtccgggacccccggggcctcag
ggtaaagagggcatgcccggacgatcggggccccccggagagccaggcatgcccggccag
aacggaggagaaggaccgcgaggaccgctggggcccaagggtgagaaaggaacgagagga
gaaaaaggagacgctggaatcggagaacgaggactacaaggtccttctggaccgataggt
ccggccggactcccaggttacggtaaagacggcagccccggccagggcggagcccagggc
gagccggggaacccgggcccccacgggcagcccggccccccggggccccccggccagtgc
gacccgtcccagtgcgcctactacgctagcctggcacaacgaccccacaccaagaacgtg
aaggggacttaa
DBGET
integrated database retrieval system
