Cololabis saira (Pacific saury): 133461499
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Entry
133461499 CDS
T09849
Symbol
tdp2b
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 2
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csai03400
]
133461499 (tdp2b)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
133461499 (tdp2b)
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Gene cluster
GFIT
Motif
Pfam:
UBA_4
Exo_endo_phos
Exo_endo_phos2
UBA_8
TAP_C
Motif
Other DBs
NCBI-GeneID:
133461499
NCBI-ProteinID:
XP_061598441
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Position
15:11055922..11062284
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AA seq
359 aa
AA seq
DB search
MASTSNTENASSSNTVSNVEEEARARLCAEFAAIAGTNSGETRRHLAEHGWDVERALNSF
FEADMDKLFEEDLQENEGSPKPKRQKVQEKPAQACIDLTGDSPSEEDNHKLSLISWNVDG
LDTNNLPERARGLCSFLVLYTPDVVFLQELIPSYIDYLRKRAVSYMIIEGGEEGYFTGMM
LKKSRVKFVESEIVAYPTTQMMRNLLVTQATFKGQKLCLMTSHFESCKGYAEERMKQLRV
VMQKMKDAPDDVTSLFGGDTNLRDTEVAKVGLPSSVCDVWERLGKEEHCRYTWDTKANSN
KTVPYVSRCRFDRVYFRPAAKEGVPRLAPDHMALVGLEKLDCGRYTSDHWGIYCSFTAG
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacatccaacacagagaacgcttcttcatccaacactgtttccaacgtggaa
gaagaagccagggctcgtctttgcgcggagtttgctgccatcgcgggaacaaacagcggc
gagacccggcgacacctggccgagcacggctgggacgtggagagagctctcaactctttc
tttgaggctgacatggataaactgtttgaagaagatttacaagagaatgagggcagcccc
aaacccaagcggcagaaggtccaggagaaacctgcacaagcctgcatagatttgactgga
gacagtccttctgaagaagataatcacaagctatcgctgatttcttggaacgtggatgga
cttgacacaaacaaccttccagagcgtgccagaggcctgtgttcttttttagtcttatat
actcctgacgtggtgttcctgcaggaactcattccatcctacatcgactacttgagaaaa
cgggctgttagttacatgatcattgaaggtggtgaggaaggttacttcactgggatgatg
ctgaagaagtcgcgagtcaaatttgtggagagtgagatagtagcttaccccaccacccag
atgatgaggaatctactagtaactcaggccacgttcaagggccagaagctgtgtctgatg
acgtctcactttgaaagctgtaaaggctacgcagaagagcggatgaaacagctgcgtgtg
gtgatgcagaagatgaaagatgctcctgatgacgtcaccagcctgtttggaggggacaca
aaccttagagacactgaggtggctaaagtgggcctgccgtccagcgtctgtgacgtgtgg
gagagactgggcaaagaagagcactgccgctacacgtgggataccaaagccaacagcaac
aagaccgttccctacgtcagccgctgtcgctttgaccgcgtctacttccgcccagctgcc
aaggaaggtgtcccccgtctggctcctgatcacatggccctggtggggctggagaagctg
gactgtggccgttacacgagtgaccactggggaatctactgtagcttcactgctggatag
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