Cololabis saira (Pacific saury): 133461547
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Entry
133461547 CDS
T09849
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03250
Viral life cycle - HIV-1
csai03272
Virion - Hepatitis viruses
csai04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133461547 (pdcd6ip)
03272 Virion - Hepatitis viruses
133461547 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133461547 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133461547 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csai04147
]
133461547 (pdcd6ip)
Membrane trafficking [BR:
csai04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
133461547 (pdcd6ip)
Exosome [BR:
csai04147
]
Exosomal proteins
Proteins found in most exosomes
133461547 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2226
Motif
Other DBs
NCBI-GeneID:
133461547
NCBI-ProteinID:
XP_061598567
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Position
15:12429291..12451768
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AA seq
871 aa
AA seq
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MATFISVPLKKSSEVDLVKPLSKYVTAAYPAGEEQGEHVRAVEELHKLRRSALGRPLDKH
ESSLEILLRYYDQLSAVEAKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLSLASLGYEKT
CVLFNCAALASQIAAEQNIDNDECLKAAAKYYQLASGAFSHIKDTVLSALNREPTMDICP
ETVGTLSLIMLAQAQEVFFLKATSDKMKDAVIAKLANQAADFYGDAFKQCQYKDNLPKYF
YFQEVLPVLAAKHCIMQANAELHQSILAKQKKRFGEEIGRLQHAAELVKTVASRYDEYVS
VKDLTDKINRALTAAKKDNDFIYHDRVPEIKDLEPIGKAALVKATAITPPLSQKFTDLFE
KMVPMAVQQSMSVYGQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IAEKARSIVEQGGLQSIEQLIRDLPELLTRNREILDESLKMLDDEETTDNELRSKFNQRW
NRTPSGDLYKPLRAEGGNFRNILDKAVQADQVVKDRYSTHCDMIALLCKPENELNAAIPS
ANPTKTLQGSEVVNVLRSQLAQLEEMKKERETLEGEIKAVTFDMSSTFLTALAQDGAISE
EQLSLSHLDKLYGSYNQRVQATIRTQEELLGQVQTSHQEFSSLKQSNTESNQREDILKKL
ASAHDSYVEISNNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIARE
PSAPSFSVPAYQSTPAAAAPGPTPAPRTVFQPQQQPQPKPQPPSRPPPPTFTPQAASMTP
ASPAPSGPPQPVAPAAQGPPYPSYQGYPGYYQMPMGYNPYAYGQYNMPNMPYMPYQTPPG
QGGYPGAPPAGQPYPGYPQQPPQQQPYYPQQ
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgtttatttctgtcccgttgaagaagtcgtccgaggtggacctggtgaagccg
ctgtccaagtacgtgacggccgcgtacccggcgggagaggagcagggcgagcacgtccgc
gccgtggaggagctgcacaagctccgcaggagcgccctgggccgcccgctggacaaacac
gagagctccctggagatcctgctcagatactacgatcaactgtctgctgtagaggcaaag
tttcccttctctgaaaaccagctctgcttaactttcacatggaaagatgcttttgacaaa
ggatcgctgttcggtggctctgtcaaactctctctggccagcctgggctacgagaagacg
tgcgtgttgttcaactgcgccgctctggccagtcagatcgctgcagagcagaacattgac
aacgatgaatgtctgaaggctgctgccaaatactaccagctggccagtggagcgttcagt
cacattaaggacacggtgctctctgcgctgaacagggagcccaccatggacatctgccca
gagaccgtgggcacgttgagcctcatcatgctggcccaggcacaggaggtcttcttcctc
aaagccacctcagacaaaatgaaagacgctgtcattgcgaagctggccaatcaggcggca
gatttctacggcgatgccttcaagcagtgccagtacaaggacaaccttcccaagtatttt
tattttcaggaagtgttgccggtgctggcggcgaagcactgcatcatgcaagccaatgct
gagctgcaccagagcatcctcgccaaacagaagaagcgctttggagaggagattggacgc
ctgcagcatgcagcagagctggtgaagacagtggcgtctcgttatgacgagtacgtaagc
gtgaaagacttgactgacaagatcaaccgagccctcactgctgccaaaaaagataatgat
ttcatctaccacgaccgcgtgcctgagatcaaggacttggagccaattggcaaagcagca
ctcgtcaaagccaccgccatcacgcctccgctcagccagaaattcacagatttgtttgag
aagatggttcccatggctgtgcagcagtccatgagcgtttacggccagaggaaggccgag
actgtaaacaggctggtgggaacaatgagggaggcgaccaatctctgcaacggggtgttg
gcatccttgaaccttcccgctgctctggaggatctgtcaggagactccatcccacaatcc
attgctgagaaggccagatccatcgtggagcaggggggactgcagagcatcgagcagctg
atcagagacctgccggagctgctgacccgcaacagagagatcctggacgagtctctgaag
atgctggacgatgaagagactacagacaacgagctaagaagcaagttcaaccagcgctgg
aacagaaccccatctggagacctctataagcctctccgtgcagagggtggaaacttccgc
aacatcttggacaaggcggtgcaggccgaccaagtggtgaaggaccgctacagcacccac
tgtgacatgattgccctgctgtgtaaacccgagaatgagctcaacgctgccatcccgtca
gccaacccgaccaagaccctgcagggcagcgaggtagtcaatgttctgcgctcccaactc
gcccagctggaggagatgaagaaggagcgggagactctggagggagaaatcaaggctgtg
acattcgacatgtcctctaccttcctgacggcgctcgcccaggacggagccatcagtgag
gagcagctgtcgctctcccacctcgacaagctgtacggcagctacaaccagagggtgcag
gccaccatccgcacgcaggaggagctgctgggacaagttcagacctcccaccaggagttc
agcagcctgaagcagtccaacacggagagcaaccagagggaggacatcctgaagaagctg
gcttcggctcacgacagctacgttgagatcagcaacaacctgcgcgaaggcaccaagttt
tacaacgacttgacagaaatcctgctcaagttccagaacaaatgcagcgacatcgttttt
gcccgcaagacagagcgggatgaactgctcaaggagctgcagcagagcatcgctcgagag
cccagcgctccatccttcagtgtccccgcctatcagagcactcccgccgccgcggccccc
ggcccaacccctgcacccagaaccgtcttccaaccccagcagcagccccagccaaagcct
cagcctccctccagaccgcctcctccaaccttcaccccccaggcagcttccatgaccccc
gcctctccagcacccagtggtcctccccaacctgtggccccagccgcgcagggaccgcct
tacccctcctaccaaggctatccggggtactaccagatgcctatgggctacaacccgtac
gcgtacggccagtacaacatgcccaacatgccctacatgccctaccagacgcccccgggg
cagggaggatacccgggagcccctccagcaggacagccgtaccccggctacccccagcag
ccccctcagcagcagccttactaccctcaacaataa
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