KEGG   Cololabis saira (Pacific saury): 133461552
Entry
133461552         CDS       T09849                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133461552 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csai03041]
    133461552 (snrnp40)
Spliceosome [BR:csai03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    133461552 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    133461552 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 133461552
NCBI-ProteinID: XP_061598575
LinkDB
Position
15:12530529..12538104
AA seq 347 aa
MIEPKKRVGDMAVVPTVVKRPRTELVAAAQSQQLVASGPPRTSSLTAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCENYATLKGHSGAVMDLHYNTDGSMLFSASTD
KTVGVWDSETGERMKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSITGLSLSSEGSYL
LSNSMDNTLRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSTDGSKVAAGSCDRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVMSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgagcccaagaagcgagtgggagacatggcggtggtgcccacggtcgtgaagcgg
ccccggacggagctggtggcggcggcccagtcccagcagctcgtggcctcgggccctcca
cggacctccagcctgacggctcccatcatgctgatgtctggtcacgagggcgaggtgtac
tgctgcaagtttcaccccaatggagccactctcgcctcctctggattcgacagactcata
ttgatgtggaacgtgtacggagactgtgagaattacgccaccctgaagggccatagtgga
gcagtgatggatctgcattacaacacagacggcagcatgttgttctcagcgagcacggat
aagactgtaggtgtttgggacagtgaaacgggtgagaggatgaagcgtctgaagggccac
acctccttcgttaactcctgctacccggctcgcagggggccccaactcgtctgcacaggc
agtgacgacggcaccgtcaagctgtgggacatccgcaaaaaaggggccatccacaccttc
cagaacacctaccaggtactggccgtgacattcaatgacaccagtgatcagatcctgtcc
ggaggcatcgacaacgacatcaaggtgtgggatctgcgacagaataagctgatctacaac
atgcacggccacggtgactccataactggactcagtctaagctctgagggatcgtacctt
ctgtccaactccatggacaacacactccggatttgggatgtgcggccatttgctccaaag
gagagatgtgtgaagattttccaaggcaacatccacaactttgaaaagaacttactgaga
tgctcctggtctaccgacggcagtaaggtcgctgcaggctcatgcgatagatttgtgtat
atttgggacactacatctcgaagaatcctgtacaagctgccgggtcacgccggctccgtt
aatgaggtggttttccatccagaggagccgatagtgatgtccggctccagcgataaacga
ctgtacatgggagagattcagtag

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