Cololabis saira (Pacific saury): 133461575
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Entry
133461575 CDS
T09849
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133461575 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133461575 (smarcc1b)
03036 Chromosome and associated proteins [BR:
csai03036
]
133461575 (smarcc1b)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133461575 (smarcc1b)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133461575 (smarcc1b)
PBAF complex
133461575 (smarcc1b)
GBAF(ncBAF) complex
133461575 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF2756
Motif
Other DBs
NCBI-GeneID:
133461575
NCBI-ProteinID:
XP_061598628
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All DBs
Position
15:complement(13539196..13552045)
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AA seq
954 aa
AA seq
DB search
MATMSGTISTNLAFPGTSQATPGTFAQQRRESSPAAWFWESADTLAQLEVARQWLGGKHY
KKFVQAEAPSCQVLAAVALQLLQFHEDAFGRQAVSPALTKLPAHCFTDFRAGGGLCHILG
TAYKFKVEQGWRRFDLQNPSRTERNIEMFGAIEKTLIQNNCMTLPVVYLDANVDQELASR
LTGIITKHQGSITDDRTIASHHVSTSPGSTEEDEWMRPVMRKDTHVLVHWGMHPDSYDSW
LSSSDVEGEVEELLHTERPWRVHAGWVLDADIFNEWMNEEDYHVNERNVPVVLRRQIHLQ
EDQDSKSKKRRRSPSPISSEGRKKGKKGRRRGQQEEELEGDLTKDMEDPTPVPNMEEVVL
PKNVNLKKDSENTPVKGGIMADLDDQEDDFPGRDDEEGRGDIPRLSEGEENITEQTHHII
IPSYTSWFNYNSIHAIEKRALPEFFNGKNKSKSPEIYIAYRNFMMDTYRLNPQEYLSSTS
CRRNLTGDVCSLIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPAGLAPLQ
HKPLQVSASQHMLYFPEKSREKPAECQNFGLRSDIYARKHPKTKGANAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAFQPVPFSQS
ENPVMSTVAFLASVVDPRVASAAAKAALEEFSKVQEEAGDKASEVSSQSEKTDLMDAEKL
DSEPYQLPLRVDGVKMEPGVSKMEADGVKRGLSENMLGEERDGTCVGRVDDDDSIGRREG
DGDDGRRMMELDLVESSVTTAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLE
IKLRHFEELETIMDREKEALEQQRQQLLQERQTFHTEQLKQAEIKVRQQREQQSQPGYTM
QHSGQSLPNRMMPGGGNAPTITPRNPGAPNGMYPSSQPDGIAPSQTGPPSSTHN
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggctacaatgtctggaacaatatccacgaacctcgcctttcctgggaccagccaggcg
accccggggacatttgcacagcagagaagagagagcagccccgcggcgtggttctgggag
agcgcggacaccctagctcagctggaggtggcgcggcagtggctcggggggaaacactac
aaaaagttcgtgcaggcggaggctccgtcctgccaggtcctggctgcagtcgcgctgcag
ctgctgcagtttcatgaagatgcgtttggcagacaagccgtcagtcccgctctcactaaa
cttcccgctcattgcttcacggactttcgagcaggaggtggactctgccacattctcggc
actgcttacaagttcaaggttgaacagggctggcgaaggtttgacttacaaaatccatcc
agaactgagaggaacatagaaatgtttggggctattgaaaaaactctaatccagaacaac
tgtatgactctgcctgtggtatatctggacgctaatgtggatcaagagctggccagccga
ctgactggtatcatcaccaaacaccagggttccatcacagatgacagaacaattgccagc
catcatgtttcaacatcacctggttccacagaggaggatgagtggatgcgtcctgttatg
agaaaagacacgcatgtcctggtacactgggggatgcatcctgacagttatgacagttgg
ctgtcttcaagtgatgttgaaggagaggtggaagagctgctacacacagagagaccatgg
agggttcatgctggttgggttctggatgcagatatcttcaatgagtggatgaatgaggag
gactatcatgtaaatgagaggaatgtaccagtggtccttcgtcggcagattcacctgcag
gaagaccaggactcaaagtccaaaaagagaagacgttcaccctctcccatttcctctgaa
ggcaggaagaaaggaaagaaagggagaaggcgtgggcaacaggaagaagaactagaggga
gacctgactaaagatatggaggaccccactcctgtgcccaacatggaggaggttgtacta
cccaagaatgtgaacctgaaaaaagacagcgagaatactccggtgaaaggagggatcatg
gctgaccttgatgatcaggaagatgattttccaggaagggacgatgaggaaggaagaggt
gacatcccacgcctatcagagggcgaggaaaacatcactgaacaaacccatcacattatt
ataccaagctacacgtcttggttcaattacaacagtattcatgcaatagagaaacgtgca
ctgccagaatttttcaatggaaagaacaaatcaaaatctcctgaaatctatattgcatat
cgtaacttcatgatggacacgtaccgactgaacccccaggaatacctgagctcaacgtcc
tgcagacgtaacctcacgggagacgtttgctcactcataagggttcatgcttttttggag
cagtggggtttgatcaactaccaagtggacgcagagagcagacccctccccatgggacct
cctcccacacctcatttcaacgtcctggctgacacacccgccggactggctccgctacaa
cacaaacccctacaggtgtcggcctcccagcacatgttgtatttcccagagaagagccga
gagaaacctgcagagtgccagaactttgggctgcgctctgacatctacgccaggaaacat
ccgaagactaaaggagcaaatgcaggaagggaatggacagagcaggagacactcttgtta
ttggaggccctggaggtctacagagatgactggaacaaagtgtcggagcacgtgggctcc
agaacacaggacgaatgtattctccacttcctccgtctgccaatagaggatccctacctg
gaggactcatcagcctctctgggtccgctggcgtttcagcccgtgcctttcagccaatcg
gagaaccccgttatgagcactgtggccttcctggcgtctgtggtggatccacgcgtggca
tcggctgcagctaaagctgcactggaggagttttccaaagtgcaggaggaggcaggagat
aaagcatctgaagtatccagccagtcagaaaaaacagatctaatggatgctgaaaaactg
gactccgagccctatcagctcccattaagggtggatggggtcaaaatggaacctggcgtt
tcaaaaatggaggcagatggagtcaaaagaggactctctgaaaatatgcttggagaggag
agagacggtacgtgtgtcggaagggtagatgatgacgacagcatcggccgccgggaggga
gatggcgacgatgggaggagaatgatggagctggacttggtggaaagcagcgttaccaca
gcagcagctgctgctctggcctcagctgcgacaaaagccaagcacttggcagcagtagaa
gaaagaaagatcaagtccctcgtggctctcctggttgagacccagatgaagaagttggaa
atcaagctcagacactttgaagaactggaaaccattatggaccgagagaaagaggctttg
gagcagcaacggcagcagctcctgcaggagaggcagactttccacactgagcaactgaag
caggcagagataaaggttcgccagcagagggagcagcagagccagccgggttacacaatg
cagcattcaggccagtccttacccaaccggatgatgcctggtggaggaaatgccccgacc
ataacccctcgaaaccctggcgctcccaacggcatgtatccctcctcacagcctgatggg
atagcaccgtctcaaactggtcctccatcttctactcacaactga
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integrated database retrieval system
