Cololabis saira (Pacific saury): 133461689
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Entry
133461689 CDS
T09849
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133461689 (sox6)
Transcription factors [BR:
csai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133461689 (sox6)
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
133461689
NCBI-ProteinID:
XP_061598768
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All DBs
Position
2:29004806..29136759
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AA seq
779 aa
AA seq
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MEGFLRSSFLLSRVMSSKQAASPFAPVVDGDDAMSQEHLSWEKEESAEAHGMPQLPLHSL
LHGKAPEEMQPLSSVPQESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGARE
RSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMEKLLSKDWKEKMER
LNTSELLAEIKGTPESLAEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQM
ELARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQ
GFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQIANMQVSPGAKMPPL
PQPLSASGPISPSSLKNDKSSSSPITQVKEEGTQPLNLSARPKTTEMVKSPTSPTQSLFP
GSKSSPNTFLGKGGIPSPLGGGLGRASSLDILSSLNSTALFGDQDTVMKAIQEARKMREQ
IQREQLQHHQQGMESKLSALTSVGLNNCRSDKERAHFENLGHHLGKLGEEGKIGHRVIDL
TRPEDLDGGTGTTEARVFRESRGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSN
ISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIGEY
KQMMRSRRQEMRQFFTVGQPPQIPITTSSSMVYPGAITMATTTPSPQMTSECSSTSASPE
PSIPVIQSAYNMKLEPSTMANNSEPVNGDDEMDMYEDFEDEPKSDYSSENDTHEPVSAN
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctttcttcgtagcagctttttactgagcagagtcatgtcttcaaagcaagcc
gcatctccttttgcccctgtggttgacggtgatgatgccatgagtcaggagcacttgtct
tgggagaaggaggagagtgcagaagcccatggcatgcctcagctcccgttgcacagtctg
ctccatggaaaagcccctgaagaaatgcagccactcagcagcgtcccacaggagagcgac
tgggacagcctggtgtcagcacagcagcgcatggaatctgacagcaataaagtatgttcc
ctgtactcctttcggaacaattccacttccccacacaagcccgaggagggggcccgggag
cgaagtgacctgctgagcggatcagcgtttggaactcccgagcgccgcaaaggaagcctg
gcagacgtagtggacacgctgaagcagaagaagctggaggagatgacaaagacagagcaa
gatgagtcctcgtgcatggagaaacttctttctaaagactggaaagagaaaatggagagg
ctcaacaccagtgagttgctggcagaaataaaaggtactcctgagagcctggcagaaaag
gagcaccagctctccacaatgatcacccagctgatcagcctacgggagcagcttctcgct
gctcacgatgaacagaaaaagctggccgcttcacaaatggagaaacagaggcagcaaatg
gagctggcccgtcagcaacaggagcagattgcaagacaacaacagcagctcctgcagcag
cagcacaaaatcaacctcctccagcagcagatccaggtccagggtcacatgcctccgctc
atgatccccatttttccacacgaccaacgcactctagcagcagcagctgccgcccagcaa
ggctttctcttccctccgggaatgtcttataagccaggtgataactacccagtgcagttc
attccatctacaatggcagctgcagcagcgtcaggactcagccccctccaacttcagcaa
ctgtatgccgcccagattgccaacatgcaggtctctcccggagccaagatgcctccactc
ccccaacctctcagtgctagtgggcccatctctccatcatctctgaagaatgacaagagt
tcctccagccccatcactcaagtcaaggaggagggaacacagcccctcaacctgtctgct
cggccaaagacgacagaaatggtcaaatctcctacatccccaacacagagcctgttcccc
ggcagtaaaagtagccctaatacttttcttggcaagggtggcatccctagcccacttgga
ggaggcctgggccgggcctcgtctctcgatattttgtccagcctaaactcgactgcattg
ttcggggaccaggatacagtgatgaaagccattcaggaggctcggaaaatgagggagcag
atccagagggagcagctgcaacaccaccaacagggcatggagtcaaagctgtccgctctc
acttcagtgggcctcaataactgcagatccgacaaggagagggcacactttgagaacctt
gggcaccacctcggcaaactgggagaggaggggaagatcggccacagggttatcgacctc
accaggccagaggatctcgatggaggcactggaactactgaggcgcgagtcttcagggag
tcccgaggacggaacagcaatgagccccatattaagaggcctatgaatgcattcatggtg
tgggctaaggatgagcggcgcaaaattctccaggccttccctgacatgcacaactccaac
ataagcaagattttgggttctcggtggaagtcaatgtctaaccaggacaagcagccatac
tatgaagagcaggctcgtctgagtaagctccatctagagaagtatccaaactataagtac
aagccgaggccgaagagaacctgcattatcgacggaaagaaactccgcattggagagtac
aagcagatgatgcgctcccggcggcaagaaatgagacagttctttactgtggggcagcct
ccgcagattcccatcaccaccagctccagtatggtctatcctggggccatcaccatggcg
accacaacaccctcacctcagatgacgtcagagtgctcaagtacctcggcgagtcccgag
ccatccattcccgtcattcagagcgcctacaacatgaagctagagcccagtaccatggcg
aacaacagcgagccggtcaacggcgatgatgagatggacatgtacgaagattttgaggat
gagcccaaatcagactatagcagtgaaaacgacacgcacgagccagtcagcgccaactga
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