Cololabis saira (Pacific saury): 133461868
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Entry
133461868 CDS
T09849
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133461868 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133461868 (arid1b)
03021 Transcription machinery [BR:
csai03021
]
133461868 (arid1b)
03036 Chromosome and associated proteins [BR:
csai03036
]
133461868 (arid1b)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Helix-turn-helix
ARID
133461868 (arid1b)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133461868 (arid1b)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133461868 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
133461868
NCBI-ProteinID:
XP_061598811
LinkDB
All DBs
Position
16:complement(26963102..27187546)
Genome browser
AA seq
2325 aa
AA seq
DB search
MAAQVASAPTRTNKNKKLSGGLGPDLNSGKSGGGGGGGGGTGQRAGPMLGPGDGTLNHVD
HHRRGELSMVHPTPASHGDKAGNTITSASASNSNTPSMESGLIAKLKCVGSGDPPMQPQQ
QQQQQPHFHQFAPQQQRHIQSHNSANNNGQVRGGDRGEHRDRGDRGMEQHHGGKENLLGG
QDESQQQQHMPGKGEGALTCKPSERMMSARFEHSNLQGPPGNNSEFNNNYYTPRPCYDQH
GQQQQQQQQQGSGMGHNSMENSHEAGFHSGQYGQYPAYRAGYGGGAYGVMGGPSGGPSGG
RQAGGMMMVGSNSSASHGKSPLGAAPGGFQRYPGQGQQQQQQQQQHGPSGATPTLNQLLT
APSPMMRGYGGTYPDYSGPAAQQQSGMGLGKDVGGPQYGATSGPWGGQQRSHPLSMNPSG
GGGQGLGRTQVSSMDFMAMKRSQLYGMASNPYSTPPQAGGGHYPSNQPYTSPPPHRYSMN
MQGRSQMGLGSMQYPQQQQVAPYGQQPMGGYSQQQQQQQQQQQHQGGQQGTPPYFSPPQQ
TPPGPTPSSYLQPRPTPQQEAQQENYSIRGSVPGISGKTNNDDGVSHDRPSSLPDLSGSI
DDLPTGTEAGLGSAMNAGGSSSSNNSSQGEQGGTSNQGQSPFSPHASPILPSQRSGPSPS
PVGSPTGSTQSQQSRSGSGPISPASGPSTNTTAPGSTMAPQSSGNGPEGAHPPITRSPVA
QERGFMSNMQRNQSGSQFASPQSGPPVSPHPSPGGPLYPNMGPYSQSSSTGPYGPQGPQY
GHQGNYPRSSNYSGAAGAGYSGPGMANSLGLNATSPMQGQGPGQPTPGGRSHGPGSQNRA
YPSIGPSSPSMPQPGGPGMGPPSLGSSNRKAHEAAGMPGSTNSVHNRLPPYARSPVHMQH
TSAHWLHPSSTCLPPSPPSRPHYPPTLPPPHSHQHRQGSYQGPCSNQPSTVPHCQPMGNN
SSAVGNAQGQGYSGPSSGAMVLSGDVIMSADGKAKTEVKDESSPSNEPHKPKQLQDGYMN
NNSSSVSQPATPASALPVPSPLSPSPASLSSYHGDDSDSISSPPWPLKTPSSPKANPNPS
ALSGERITRLYELGSEPERRPWVERYLTFMEDRGTPVPQLPAVGKKPLDLWKLYMAVREI
GGLAMVNKNKKWRELSSTMNVGTSSSAASTLKKQYIQYLFAYECKMERGEEPPADSNSNS
NSSLVGADNRKQVKIQPPSPANSGGSLQGPQTPQSSGSNSTVEAGGDLKPPTPATTPLGQ
VTPLPPNRGIVSVQDPFSEVSDPAFQKRATTLPPSVSYQQGLSMPDMMMRMQYDSKDPFA
GMRKMAGVDPYIPSQMPSGGMQDMYGRPQSALSMSQRSQYPYGPGYDRRPDHIMGMEGTM
GPPGSQNNMGPSNSEGSLYSPSRYPSQQRHDGYGQQYPSMPYGMHSSGMYPQQQSYKRPM
EGMYGPPPKRHEGDMYAMQYTNQQSDMYNHYGAGYSGPEHRPIQGQFPYPYHRDRMASSG
QSQHSIMGGGPTPNHVTDGPNMWPSRTDLTYPYSNRQGPPSQMPPYSSICREDMDGRPGQ
DQWHRQSPYMSSSGGMPPLSSRQPSCYSSSPSMGNHLPRAPSPGAFQRSMDHRMSPSKAP
FMSPMKMPKPGLAMMGSQAGGPIGQFPPNLRRDLNYPPGSVEATMPILKPRRKLSSKDSG
TPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLSQLPGFLELIVEYLRRCLI
EIFGILEEFEVATIVQKSLLDPDSTQEQGSTPEQETGATAPPGPESSPPAEMHEDQTRDA
EAETPPVKTEQTVAHSNKEDADVSVEKEDKKEDEKEEKEEEKEKECKKDCMDQPPAMLEP
KPKQASKYDKFPIKTVHKEDLIEDMTERLGYVTEFTSGLLHWQAGGGDTTTYIQTHFEPR
TDPHPRTEENKRNPNKQENKMEHENKEMVKHITATIDDVLCARVDALSCSHPARSLPSYP
FRVHPDGEKDHITLLEDEPRCLDEAPLCTTSAWQDSLSKRCLCVSNIIRSLSFIPGNDTD
MSRQPALVLLLGRLLLLHHLHPERNRSGPSYQRDEQQDRGLSSNKEEWWWECLSLLRENA
MVTLANIAGQLDLSTYPDTICLPILDGLLHWMVCPSSEAQDPFPSAAPHSQLTPQRLVLE
CLCKLSIQDSNVDLLLATPPFSRQDKLFTVLVRYVGQRKAQVYREMAVAVLSHLAQGDPT
AARAIALQKGSVGNLVSFLEDGVSMAQYQQNPHSLLHMGHPPMDPPSINMMCRAAKGLLA
MAKVEENKTEFVLYESRLLDISISSVLNAGVVAIICQVLFHLGKL
NT seq
6978 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccgaccagaactaataaaaataagaaattatctggc
ggtttgggtcccgacctcaattcggggaaatccggaggaggaggaggaggaggaggaggg
accgggcagcgagctggaccgatgctgggtccgggcgatgggactctgaatcatgtagac
catcaccgccgcggcgagctcagcatggtccatccaactccggcgagccacggcgacaag
gctgggaataccatcacctccgcgtcggcgtccaactccaacaccccgtcgatggaaagt
ggcttgatagcgaagctgaaatgcgtcgggagcggagatccccccatgcagccacagcag
cagcagcagcagcagccgcacttccaccagtttgcgccgcagcagcagcgacacatccaa
agtcacaacagcgccaacaacaacggccaggtccggggaggggaccggggggaacaccgg
gaccggggggaccggggcatggagcagcaccacgggggcaaggagaacctgctggggggg
caggacgagtcccagcagcagcagcacatgccggggaaaggtgagggggccctcacctgt
aagccctcggagaggatgatgagcgccaggtttgaacactccaacctgcaggggccacct
ggcaacaactccgagtttaataacaattattacactccgaggccctgttatgatcaacac
ggccagcagcagcagcagcagcagcagcaaggcagtgggatggggcacaacagcatggag
aactcccacgaagcggggttccacagcggccagtacggccagtacccggcgtaccgggcc
gggtacggcggcggggcctacggggtgatggggggcccctctgggggcccctctgggggc
cggcaggcggggggcatgatgatggtgggcagcaactcctcagcaagccatggcaagtct
cccctgggagcggccccgggtggcttccagaggtatccgggccagggtcagcagcagcag
cagcagcagcagcagcatgggccctcaggggccactccgaccctcaaccagctgctgacg
gcccccagcccgatgatgcggggttacggagggacttatccagactacagcggccctgcg
gcgcagcagcagtccggcatgggcctcgggaaggacgtgggggggccacagtacggagcc
acctcgggcccctgggggggccagcagaggagccatccactctccatgaacccttcaggc
ggcggagggcagggcctcgggaggacgcaggtgtcctccatggatttcatggctatgaag
cgctcacagctgtatggcatggccagcaatccttactccacccctccacaggcaggaggt
gggcattacccctctaaccagccatatacttcgcctcccccacatcgatattcgatgaac
atgcaggggagaagccaaatgggtttgggcagcatgcaatatcctcaacagcagcaggtg
gcaccgtacgggcagcagccgatggggggctacagtcagcagcagcagcagcagcagcag
cagcagcagcaccagggggggcagcagggaactcctccatacttcagcccccctcagcag
acccctccaggcccgacccccagttcctacctgcagcctcgaccaacaccacaacaggag
gcccagcaggaaaactacagcatcagaggttctgttccagggatttctgggaagaccaac
aatgacgacggcgtctcccatgaccgcccgtctagtctgccggatctgtctggctcgatt
gatgacctccccactgggacggaggctggtctgggctcagccatgaatgctggtggatcc
tccagcagcaacaatagtagccaaggggagcagggaggcacaagtaaccagggacagtcc
ccgttttcccctcacgcctcccctatccttcccagccagaggagtgggccctctccctcc
ccagtgggttcccctactggctccactcagtcccagcagtccaggtcgggttcaggaccc
atctctcccgccagcggaccctctacaaacaccactgcgccaggttcaactatggctcca
cagagctccggaaatggaccagaaggagctcaccctccgatcactcgctcgcctgtcgcc
caggagagagggtttatgtccaacatgcagaggaaccagtctggctcccagttcgcctct
ccacagtctggccctcccgtgtccccccacccatcacctgggggccccttgtatcccaat
atgggtccatactcccagagtagctccacaggaccttacgggcctcagggaccacaatat
ggacaccaaggtaactaccctcgatcctctaactacagcggggcggccggtgccggctac
agcggccccggcatggccaacagtctgggactgaacgctaccagccccatgcagggtcag
ggcccggggcagcccacaccgggaggacgcagccacggcccaggcagccagaacagggcg
tacccgtccataggtcccagttcccccagtatgccgcaaccaggggggccaggaatgggt
cctccatctttgggtagctccaaccgcaaggcccacgaggcagcaggcatgccgggatct
accaactcagttcacaacaggctgcctccgtatgccaggtctccggtgcacatgcagcac
acctccgcccactggctgcacccttcctccacctgtctgccaccctcacctccatccaga
cctcactatcctcccactctgccacccccacattcacaccagcataggcagggaagctac
caaggtccatgcagcaaccagccgagcaccgtcccccactgtcagccgatgggaaacaac
agttcagctgtggggaacgcgcaaggccaaggctacagcgggccctcctcaggagccatg
gtgctgtcaggagatgtcataatgagtgccgatggtaaagcgaagaccgaagtcaaagac
gagagcagccccagcaacgagccacataagccaaagcagctccaggatggctacatgaac
aataacagcagcagtgtgtcccagcccgccacccccgccagcgccctccccgtgccctcg
ccgctctcgcccagccctgccagtctgtcctcctaccacggagatgacagcgacagcatc
agcagccccccctggcctctcaagaccccctccagccctaaagccaacccgaacccgtcc
gccctaagtggcgagcgaatcacgcgattgtacgagctgggttcggagcccgagagacga
ccttgggtggagcgatacctgaccttcatggaggaccgtggcacacctgtcccccagctc
ccggctgtgggaaagaaaccgctagacctctggaagctctacatggctgttcgagagatt
ggaggcctcgccatggtcaacaaaaacaaaaagtggcgtgagctgtccagcaccatgaac
gtgggcacttccagcagcgcggccagcacgctgaagaagcagtacatccagtacctgttc
gcctacgagtgcaagatggagagaggagaggagccgcccgcggacagcaacagcaacagc
aacagcagcctggtcggagcagacaacaggaagcaggtcaagatccagccgccgtcacct
gctaattctggcggctcccttcaaggcccgcagacaccccagtcatccggcagcaactcc
acggtggaggcaggaggcgacctgaaaccgccgaccccagccaccaccccactgggacag
gtcacaccgctcccccccaacaggggcattgtgagtgtgcaggaccccttctcggaggtg
agtgacccggcctttcagaagcgggctaccacactgccgccctcggtttcctaccagcag
ggcctcagcatgcctgacatgatgatgaggatgcagtacgactccaaggaccctttcgcc
gggatgaggaagatggccggagtcgatccctacataccaagccagatgcccagcggcggt
atgcaggacatgtatggccggccccagtcagctctgagcatgagccaaaggtctcagtac
ccgtacgggcctggatatgacaggaggcctgaccatatcatgggaatggaggggaccatg
ggcccacctgggagccaaaacaacatgggaccttccaacagtgaaggcagcttgtactct
cccagcagatacccttcacagcagagacacgatggctatggacagcagtatcccagcatg
ccatatgggatgcattcatctgggatgtacccacagcaacagagttacaaaaggccgatg
gagggaatgtatggccccccacccaagagacacgagggcgacatgtatgccatgcagtac
accaaccagcagtcagacatgtacaaccactatggggccgggtactctggccccgaacac
agacccatccagggacagttcccctacccctaccaccgagaccgtatggcctcgtcgggt
cagagccagcacagcatcatgggcggggggccgactcctaatcatgtcaccgacgggccc
aacatgtggccttcgagaacagacctcacttatccctactccaacagacaggggccgccg
tcacaaatgccgccgtatagctccatttgcagagaggacatggacggtcggcccgggcag
gaccaatggcaccgccagtcaccgtacatgtcgtcatcaggtggcatgccccccttgtct
tcacgtcagccatcgtgttattccagctccccatccatgggtaaccacctgcccagagca
cccagccccggtgctttccagcgatccatggaccacagaatgtcacccagcaaagcgccg
ttcatgtcccccatgaagatgccaaagcccggtttggccatgatgggctcacaggccggt
ggacccattggtcagtttcctcctaacctgaggagggacctcaattacccaccggggtca
gttgaagccaccatgccaattctgaagcctcgccgtaagctcagctctaaggacagcggg
acgcctgaagcctggcgtgtgatgatgtctctgaagtccgggctgctggctgagagcacg
tgggctttagacaccatcaacatccttctgtatgacgacagcactgtggcctcctttaac
ctctcccagctgcctggattcctcgagctcattgtggagtaccttcgccgttgcctgatt
gaaatctttggcatcttggaggaattcgaagtagcaactatagttcagaaaagccttttg
gatcctgattccacccaggaacagggatctacccctgaacaggaaacaggtgctactgcc
ccgcctggacctgaatcctccccgccagcggagatgcatgaggatcaaacaagagatgct
gaggcagaaactccacccgtcaaaactgagcaaactgtggcgcacagcaacaaggaggat
gcagatgtcagcgtggaaaaggaggacaaaaaagaagatgaaaaggaggaaaaggaagag
gagaaggagaaagagtgtaaaaaggattgtatggaccagcctcctgcaatgttggaacct
aaaccaaaacaagccagcaaatacgataaattccccatcaagaccgtgcacaaagaggac
cttattgaggacatgactgagcgcctaggttatgtaacggagttcaccagcgggctacta
cactggcaggcaggtggaggcgacaccaccacatacattcagacacactttgaaccacgg
accgacccacatcccaggacagaagagaataaaagaaaccccaacaagcaggaaaacaag
atggagcatgaaaataaagaaatggttaaacacatcaccgctactattgatgatgttttg
tgcgccagggttgatgccctctcctgttcacaccctgcgcgttccttgccatcttacccc
ttccgggtgcatccagacggggagaaggaccacatcaccctgctggaggacgagccccgc
tgcctggacgaagccccgctctgcacaacctcggcctggcaggactcgctgtcgaagcga
tgcctctgcgtttccaacatcatccggagcctgtctttcatccccggaaacgatactgac
atgtcccgccaacccgctctggttctccttctgggccggctgctcctgctgcaccacctc
caccctgagcggaacaggtcgggcccgagctaccagagggacgagcagcaggaccggggg
ctgtccagtaacaaagaggagtggtggtgggagtgtctgagtctactgagggagaacgcc
atggtcacactggccaacattgcaggccagctggatctctccacctatccagacaccatc
tgcctccccatcctggacgggcttcttcactggatggtttgcccctcgtccgaagcccag
gacccctttccctcggcggcgccgcactcccagctcaccccgcagagactggtgctggag
tgtctctgcaagctgagcatccaggacagcaacgtggacctcctgctggccacaccgcct
ttcagcagacaggacaaactcttcacagtcttagtgcgctatgtgggtcagaggaaggcg
caggtgtaccgggagatggcagtggccgtcctctcccatctggcacagggagaccccaca
gcggcccgtgccatcgccctgcagaaggggagtgtgggtaatttggtaagcttcttggag
gatggtgtcagcatggcgcagtaccagcagaaccctcacagcctgctgcacatgggacac
cctcctatggacccgcctagtataaacatgatgtgcagggcagctaaaggcctgttggct
atggctaaagtggaggagaacaagacagagtttgtactgtacgaaagcagattattggac
atttccatttcctcggtgctcaacgcaggagtagtcgccattatttgccaggttctgttt
cacttggggaaattatga
DBGET
integrated database retrieval system
