KEGG   Cololabis saira (Pacific saury): 133461946
Entry
133461946         CDS       T09849                                 
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X1
  KO
K20177  vacuolar protein sorting-associated protein 3
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:csai00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    133461946 (si:ch211-266g18.9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:csai04131]
    133461946 (si:ch211-266g18.9)
Membrane trafficking [BR:csai04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    133461946 (si:ch211-266g18.9)
SSDB
Motif
Pfam: Vps39_1 CNH TPR_Vps41 Clathrin zf-Vps39_C
Other DBs
NCBI-GeneID: 133461946
NCBI-ProteinID: XP_061598960
LinkDB
Position
16:13064651..13071477
AA seq 892 aa
MDLVSSAFAGDLTLQLDFSFVPLQSQHPALAMAFRAFTQVHVYEKQGVSKEKDKTSIQCL
ECYDRNVYMGTKDATVQHLILSRSTNGVLNSGQTNTREGRARKLGSSGSVVKLRAVPLLN
HLLVLWDRSVTALNMFSLEPVPTLKKIQHVSLFELCDSSLETERACVQIVTSSSRRKVIQ
IHVVGVSRWEVVKEVSLLQEPVALALDGTSLCVATAHRYVLCNIHTGSTEELFSHNHRRQ
QAFVASVGRGEFLLNGPECLGVFVMKTGTCQRPPLQWPREVLAVGVYFPYILALEPHVLS
VYSMLDQLCKQTLNLSGGQGLLSTSDGVLAFTERDVFSLKLVPFEEQIRELLGHDRVEEA
LVLLDGVQSYYPLDTYEELQKATTRLAGFVHFYQEDFAVARDLFIKGELDPREIIHTYPH
MGLSEGFQSQFDQVNHRRDLKVIWEGDRNTFHRYLAFLGDYLRAVRATEQGLACVKQVDG
ALLWLYVQLQDHESLQQLVDFPNECSLDHCVSVLDQHNRFFALGSLYKSHGIHTDAIETW
MKIVDGIYKDPTCSDVYGHIVKTLTQLKDRETVWAFADWTLQRNQKVGVQIFTKRPPDDQ
FENCDVLALLEKYPRALLLYLEFLTCDLNSKEERYHSRLILAYVAETLQEQLETELDVTR
AKLQQLLWESKCYDVSAVYDRMKSTSLHLEKAILLGRTGDHPQALQLLVHQERDLQAAEA
YCCRAARDQDSHLLFTLLQIYLSSPDLTGAALDLLKNHPQAFAAEKVIQLLPDSWSVQLA
SHSLIGSLRTTFHQRQMLRVQKGLAQAELLRHQVIWMQASKTKFRVNREQRCSVCQDNLT
EPQFSRDPRETWVTAILNQISRLLTVCLPNHFSRLYIVTEAEPSTNVNFLDP
NT seq 2679 nt   +upstreamnt  +downstreamnt
atggaccttgtttcttctgcctttgctggtgatttaacacttcagctggatttttcattc
gtgcctttgcagagccaacatccagcattagcaatggctttcagagcattcacccaagtg
catgtttatgaaaagcagggagtctcaaaagagaaggacaagaccagcatccagtgcctt
gagtgctatgaccgaaatgtatatatgggaactaaagatgcaacagtccagcacctgatt
ctcagcagaagcacaaacggagtcctgaattcgggccagaccaacaccagagagggtaga
gcgagaaaactaggctcaagcggctctgtagtcaaactgagggcggtcccgcttctcaac
catctgctcgtcctgtgggacagaagcgtcactgccctcaacatgttctccttagaacct
gttccaactctgaagaagatccagcacgtgtctctgttcgagctgtgcgactcatcgctt
gaaacggagagagcatgtgtgcagatagtgacgtcctctagccgcaggaaagtgatccag
atccacgttgtgggggttagcaggtgggaggttgtgaaggaggtgtccctgctccaagaa
cctgtggctttggcactagacggcacaagtctgtgtgttgccactgctcacagatatgtc
ctctgcaacattcacactgggagcaccgaggagcttttttcccacaatcataggaggcaa
caggcctttgttgcctcagtggggcgaggggagttcctcctgaatggtcctgaatgtttg
ggcgtgtttgtgatgaagacagggacgtgccaacgccctcccctccagtggcctcgggag
gtgctggcagtcggagtatatttcccttacatcctagccctcgagccacacgtgctctcc
gtctacagcatgttagatcagctgtgcaaacagacgctcaatctcagcggaggacagggg
ctgctttccacatcagatggtgtactagcgttcacagaaagagatgttttcagcctgaag
ctcgtgccattcgaagagcagatccgtgagctgctgggacatgacagggttgaagaggcc
ttagtgctgctggatggagttcaaagctattatccacttgacacatatgaggaactgcag
aaggccactactcgcctagctggatttgttcacttctaccaggaggattttgctgtggcc
agagatctgttcattaaaggtgaactggacccgagagaaatcatccacacctacccccac
atgggtctcagcgagggctttcaatcgcaatttgatcaagtaaaccaccgcagagacctc
aaggtgatctgggagggggacaggaacacatttcatcgttaccttgccttcctgggagat
tatctgagagcagtcagggccacagagcaaggcctggcgtgtgttaagcaggtggacggc
gccctcctgtggctgtatgtgcaactgcaggaccatgagagtttgcagcagcttgtagat
ttccctaatgagtgcagcctcgaccactgcgtttctgttttggaccaacacaacagattt
tttgcattgggctccctttacaaaagtcacgggattcacactgatgccattgagacttgg
atgaagattgtagatggcatctacaaagatcccacgtgctctgatgtttatggacacata
gtaaagactcttactcagctgaaagacagagagactgtgtgggcttttgcagactggact
ctgcaaagaaaccagaaggtaggtgtacagattttcaccaagcgtccaccagatgatcag
tttgagaactgcgacgtccttgccctcttggagaagtatccacgagcattgcttttgtat
ctggagttcctgacctgcgatttgaacagtaaggaggagaggtatcacagccgtctgatc
ctggcatatgttgcggagacgctgcaagaacaactggaaacagagttggatgtgaccaga
gcgaagctgcaacagctgctatgggaatctaaatgctacgacgtctctgccgtgtatgac
cggatgaaatcaacaagtctgcacctagagaaagccattctcttgggtaggactggtgat
cacccccaggcgctgcagttgcttgttcatcaggagagggacctccaggctgcggaggcc
tactgctgcagggctgcccgggaccaggactcacacttactattcaccctgctccaaatc
tacttgagctccccagatctcacaggagctgccttggacctgctcaagaaccaccctcag
gcatttgcagcagagaaggtcatccaactccttcctgactcctggtctgttcaattagcc
tctcactctttaattggatctctcagaacaacctttcaccagaggcaaatgctgagggtg
caaaagggtttggcccaggcagaactcttgaggcaccaggtcatttggatgcaagcctca
aaaacgaaattcagagtgaacagggagcagaggtgttcggtttgtcaggacaaccttaca
gagccacagttttcccgtgatccaagagaaacatgggtcactgcaatcttgaatcagatt
tctcgcttgttaactgtttgcctacctaatcacttttccagattatatattgtcactgag
gcagagccctctacaaacgttaatttcttggatccatga

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