Cololabis saira (Pacific saury): 133462011
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Entry
133462011 CDS
T09849
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04137
Mitophagy - animal
csai04140
Autophagy - animal
csai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133462011 (hif1aa)
04137 Mitophagy - animal
133462011 (hif1aa)
04148 Efferocytosis
133462011 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133462011 (hif1aa)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
133462011 (hif1aa)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
133462011
NCBI-ProteinID:
XP_061599069
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Position
16:complement(22348297..22369288)
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AA seq
745 aa
AA seq
DB search
MDTEIVPEKKRVSSERRKEKSRDAARCRRGKESEVFYDLAKLLPLPHSVSSSLDKASIMR
LTISYLRMRKLLCTDEPIEGEETELDIQLNSSYLKALDGFFMVLSEDGDMIYISENVNKC
LGLAQFDLTGHSVFDFTHPCDQEELREMLVHRTGSKKVKESNTERSFFLRMKCTLTSRGR
TVNVKSASWKVLHCSGHVQVNESQAENTTNCHSDPPVPYFVLICDPIPHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIEEEKLVLSLEQTEDV
KPVKKEEQEVKEAVMESSQPSPVKEETCPELDVVKLFTQVVEPEPLISLFEKLKGKPEAL
TQLAPAAGDTIISLDFSCPEPDTHLLEEVPLYNDVMLPSTSDRLVMPLSPLPPSEPLQVS
NNPEESKSESFPPTPSTAPTTPSPPEADGPLDIFPIDSDMNSDFKLDLVEKLFAIDTESK
TTFSTQDLDLEMLAPYIPMDDDFQLQCISPEEPLSCEPVETPESSPVQGTQNIHDYSDSQ
FSAPSSQAASPTPPEPVSAPLLATIITQSTPQLEKEVPLKTLAAQNIQRKRKLNDLKELI
GQETLPQEEVEKGKKMKASESGTTKTIFLVPSDLASRLFGTTEASTSLFSLPQLTRYDCE
VNAPLQGRQYLLQGEELLRALDHVN
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggacacagaaattgtacccgaaaagaaaagagtgagctcagagcggaggaaggagaaa
tcgagggatgcagcaagatgccgtcgtgggaaagagtcagaggtgttctacgatctggcc
aagctgctgcccctcccacacagcgtcagctccagcctggacaaggcctccatcatgagg
ctgaccatcagttacctgcgcatgagaaaactactctgcactgatgagccaattgaagga
gaggagacggagcttgatatccagctaaacagctcatacctaaaggccttggacggtttt
ttcatggtgctatctgaggatggggatatgatctatatctcagagaatgtcaacaagtgc
ctcggcctggcgcagtttgacctgactggacacagcgtgtttgatttcacacatccctgt
gaccaagaggagctcagggagatgctggtccacagaacaggctccaagaaagttaaggaa
tcaaatacagagcgcagcttctttctccgaatgaaatgcaccctcaccagcagaggtcgc
actgtcaatgtcaagtcagcttcgtggaaggtgcttcactgctctggtcacgtgcaggtt
aatgagagtcaagctgagaataccaccaattgtcacagtgacccccctgtcccctacttt
gttttgatctgtgaccccattccccacccctccaacatcgaggtcccactggacaccaag
acctttctcagccgccacacgatggacatgaagttcacatattgtgacgagaggatcact
gagctcatgggttatgatccagaggacctgttgaatcgttccgtgtatgagtactatcat
gctctggattcagaccatcttaccaagactcaccacaacttgtttgcaaagggtcaagtc
agcacaggccagtaccggatgttagcaaagagaggaggctttgtgtgggtggaaacacag
gccactgtcatctacaacaacaagaactcccagccacagtgtgtcgtctgtgtcaacttt
gtgctcagtggaatcgaggaagaaaaactcgtcttgtctctggagcagactgaggatgta
aagccagtaaagaaggaagagcaagaagtcaaggaggctgtaatggagagcagccagcct
tccccggtgaaggaagagacgtgcccagagctggatgtggtcaagctctttacacaggtg
gtagagcctgagccgctgattagcctgtttgaaaagctcaaggggaagccggaggccctc
acccagctggccccggcagctggagacacaatcatctccctggacttcagctgtcctgaa
ccggacacccacctgctggaggaagttcctctctacaatgatgtaatgcttccctccaca
agtgacagactggtcatgcctctgtcccctcttcctcccagcgagcccctacaggtctcc
aataacccggaggagtccaaatctgagagctttcctccaaccccctccactgcaccaacc
acccctagtcctccagaggctgacggtccacttgacatcttccctatcgattctgatatg
aactcagattttaaactagacttggtggagaagctgtttgccattgacaccgagtctaaa
accaccttcagcacacaggacttggatctggagatgttggctccctacatccccatggac
gatgacttccagctgcagtgcatcagcccagaagagcctctgtcatgtgaacccgtcgaa
acccccgaaagttctccagtccagggcacacagaacattcatgattattccgactctcag
ttcagcgcaccaagcagtcaggcggcttctcctacaccacctgaacctgtcagcgctcct
cttctggccaccatcattacacagagcaccccacagttggagaaagaagttcccttgaag
actctagcagctcagaacatacagcgcaaaagaaaactgaacgacctgaaggagttaatt
ggacaggaaacgctgcctcaggaagaagttgaaaagggcaaaaaaatgaaagcatcagaa
tccggaacaaccaagactatatttctagtgccttcagatttggcaagtcgattgtttggc
accacagaagcatccacttcccttttcagcctaccgcagctcacccgctacgactgcgag
gtcaacgcccctttacagggccgtcagtacctgctgcagggcgaggagctgctgcgtgct
ctggaccacgtcaactga
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