Cololabis saira (Pacific saury): 133462665
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Entry
133462665 CDS
T09849
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133462665 (nrde2)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133462665 (nrde2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Arteri_Gl
Motif
Other DBs
NCBI-GeneID:
133462665
NCBI-ProteinID:
XP_061599991
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All DBs
Position
16:complement(32782690..32800798)
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AA seq
1201 aa
AA seq
DB search
MALFPAFSEAKTDNDQDSPKELDWLNNKSFQTRNALSLQSHFLEKTKDERETWVGSDASS
AEKEQKRDGDAVPRKKKKKDEKKRKKKKKHKKKSGRYSSSGSDSETIYPSDLKREQEDRH
QPAPLATCFSWLDDLKLPTEQPFCVDRKADSANWNYKSLYRGDIARYKRKGSSSLGLDSR
KQEISWEDSETKKKHKKGDNKNAADRYFSTASRHLLKSEPAVPVLSVTPDGSQAITSFLP
LGNAEGENRRPETGAGVQSFSVNPLGVYDSSTTLWLQGKGQPGEQKQDTQMEESDTRVVG
RTEEFNRRLREKPGDTQLWIQFIQYQDELSAAAFGGQDEQQGGDSAEHRKSSYRAVLEKK
LSIVERAVATNPTCIALQLERLRICQELWEPSALAKEWKKLVFLHPNSAPLWRKYLLFIQ
SYFSNFTVSKVHSAYGKCLSTLSAVRDGSMVSHPALPGTEEDLLDIFILQCHFLRQSGHS
EKAISLFQAMNDFTFFKPDNVKKLSTKQQAEFFEPFWDSGEARVGELGARGWKAWMHQQE
RGGWLQPSAEEDEEEEVDEEEVKDRSEARWKVWLDVEATREAAHWLPWRPDTAKGQTEED
CEDPDRQVLFDDIGPSLICLSTPVLQLRFLLHFLSFLGLPVNSVLSAASSQSGLLVESLS
LLTQGNDIQHPLTSYNLADPGVNSVGHMTTLQGTRKCVGLGKQGEKFLTNVLSMIQPVLP
PPHRALLSLSWIHYEKLKVSNCLRIGNKKRLRTQGKRSKQVAKRLLKEPDNRSSLVMWQE
YAHLEWMLGNLDEARKVFSTATATEGTRGLSSPTLCDLCLLWSQLEVEDTAKERAGQLDV
TTSPVVCILTRLAEGTSSSSPSSPQSLSPVSILKARKSYELALTTSLSALDQNIRNPKPD
RKADQEDLLEEKLRLSGLVGCYALFQYLTVSIQAAAAVYSLARERMEELHRTLTPEKDFS
GNNKAESASIEASRCAADPTPRNRRLMSQLASECEVLAVQQAALLRYHSSTSVFPLAALR
QTLTSALAAWPCNALLWTVYVQVENRYHSAGRARRFFHSVTRDLHSLVPRLFAIVAEQQR
KQLVDDTQRSCCYDEALPILPENGLSNRIRGLFETAIATEMGAYCPLLWRMYVHFLVSEG
KVDKARGIFYKALQNIPWVKGLYMDAVQLFPEHLQEFVDLMTEKELRLRLPLEELDILLE
D
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtttccagctttttctgaggcaaaaactgacaacgatcaagattcgcctaaa
gaattagattggctgaacaacaagagttttcagactaggaatgcactttctcttcaaagt
cattttttagagaagaccaaggatgagagggaaacatgggttggcagtgacgccagctct
gctgagaaggaacagaagagagatggagatgctgtacccaggaagaagaaaaagaaggat
gaaaagaagaggaagaagaagaaaaaacacaaaaagaagagtgggaggtatagtagcagt
ggatcagactctgaaaccatctaccccagtgatctcaaaagggaacaagaggataggcat
cagcctgcaccattagcaacttgcttctcctggttagacgacctcaagcttcccacagag
caaccattctgtgtggaccgtaaagcggattcggctaactggaattacaagtccctctac
agaggagacatagccaggtataagaggaaaggcagctcctccttgggtctagactctcgt
aagcaggaaatcagctgggaggattcagagacaaaaaagaaacataaaaaaggggacaac
aaaaacgcagcagacagatacttttctacggccagtcgacatctgctgaagtctgaaccc
gctgttcctgtactctccgtgactccggatggtagccaggccatcacctcattccttccc
ctgggcaatgctgagggggaaaacagaagaccagagacaggagctggagtccagtcgttt
tcagtgaatccccttggtgtgtacgactcgtccacgaccctctggctgcaggggaaaggc
cagccgggtgaacagaagcaggacacacagatggaggagagtgatacccgtgtggttggg
aggactgaagagtttaacaggcgcctcagggagaaacctggagatacacagctgtggata
cagttcatacagtaccaggacgagctgagtgcagcagcgtttggaggccaggatgagcag
cagggcggtgactcagcagagcaccgtaagtcgtcttacagagcggtcctggagaaaaag
ctcagcattgtagagcgagctgtggccaccaaccccacctgcatcgctctgcagctcgag
aggctcaggatctgtcaggaactctgggagccgtcagcgttggctaaagaatggaagaaa
ctggtgttcctccacccaaatagcgctcctttgtggagaaagtatctgctctttatccag
agctacttcagcaacttcactgtatcaaaagtccactctgcttatgggaagtgtctgagc
acgctcagtgctgtgcgagacggcagcatggtctctcacccagctctgccaggaactgag
gaggacttgttggatatcttcatcctgcagtgtcacttcctgcgccagtctggtcactcg
gagaaagccatttctctgtttcaggccatgaacgactttaccttcttcaaacctgacaat
gtgaaaaaactgtctactaagcagcaggctgagttctttgagccgttctgggacagcggg
gaggcgagagttggggagctcggggccagaggctggaaagcctggatgcaccaacaagag
cgaggaggctggctccaaccgtccgcagaggaagatgaggaggaggaagtggatgaagag
gaggtgaaggacaggagcgaagccagatggaaagtctggctggatgtggaggcgactcgt
gaagcagctcactggttaccgtggagacctgacacagcaaagggccagacagaggaggac
tgtgaggaccctgacagacaggtgttatttgacgacattggtccttccctaatttgtttg
tcgacaccagtactacagctccgatttcttctacacttcttgtccttcctgggtctgcct
gtaaactctgtgctatctgctgcctcctctcagtctgggctgcttgtggagagtctttct
ctgctcacacagggtaatgacatccagcatcctctgacctcctataatctagctgaccct
ggggttaattctgtaggtcacatgaccacactgcagggaacgaggaagtgtgtgggactc
gggaagcagggtgagaagttcctcaccaacgtgcttagtatgatccagcctgttcttcct
cctccccaccgagctcttctgtcactcagctggatccattatgagaaactcaaggtctca
aactgcttgcggatcggcaataagaagcgtcttcgcactcagggcaagcgcagcaagcaa
gttgccaagcgactgctcaaagaaccagacaaccgctcatcgctggtgatgtggcaggag
tacgcccacctggagtggatgctgggtaatctggatgaagctcgcaaagtgttctccaca
gccacggcaacagagggaaccagagggctgagcagccccaccctgtgtgatctgtgcctg
ctgtggtcccagctggaggtggaagacacagctaaagagagagcaggacaactcgacgtg
accacgtcgccagttgtttgtatactgaccagactcgcagagggaacctcctcatcttct
ccttcatcccctcagtccctctcgcccgtttccattttgaaagccaggaaatcgtacgaa
ctggctctgactaccagcttgtcagccctggaccaaaacatcaggaaccccaaacctgac
agaaaagcagaccaggaagacctgctagaagagaagctgagattgagcggtctggtcggc
tgctacgctctgttccagtatctcacggtgagcatccaagcagccgccgccgtctacagc
ctggccagggagaggatggaggagctgcaccgcacactcacacccgagaaggacttcagc
ggtaataataaggccgaatctgcttccatcgaagccagccgctgtgcagctgatcccact
cccagaaacagacgtttaatgagccagttagcttctgagtgcgaggtcttggccgtgcaa
caggcggcactgctgagataccacagcagcaccagcgtgtttcctctggcagcgctgaga
caaacgctcacctcggccctcgctgcctggccctgcaacgcccttctgtggaccgtatac
gtgcaggtggagaaccgttaccacagtgctggccgggcacggcggttttttcactctgta
accagagacctccacagtttggtaccacgcctgtttgctattgttgctgaacaacaaagg
aagcagctggtggatgatacgcaaaggtcttgttgctatgacgaagccctgcccatactg
ccagagaacggcctcagcaaccgaatccgtggtctgtttgaaaccgccatagcaacagag
atgggtgcttactgtcctttattgtggaggatgtacgtccacttcctggtatcagaaggt
aaagtggataaagccagagggatcttctataaggccttgcagaatattccctgggtgaag
ggtctgtacatggatgcagtgcagctgttccccgagcatctgcaggagtttgtagatctg
atgacagagaaagaactccgactgagactgcctttagaagagctggatatactactggaa
gactga
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