KEGG   Cololabis saira (Pacific saury): 133462779
Entry
133462779         CDS       T09849                                 
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03082  ATP-dependent chromatin remodeling
csai03083  Polycomb repressive complex
csai04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133462779
   03083 Polycomb repressive complex
    133462779
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    133462779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csai03036]
    133462779
Chromosome and associated proteins [BR:csai03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     133462779
  Histone modification proteins
   HAT complexes
    HATB complex
     133462779
   HDAC complexes
    Sin3A-HDAC complex
     133462779
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     133462779
    PRC2.2
     133462779
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     133462779
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133462779
  Chromatin remodeling factors
   NuRD complex
    133462779
   NuRF complex
    133462779
   NuRF complex (fruit fly)
    133462779
SSDB
Motif
Pfam: CAF1C_H4-bd WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EML Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd WD_LRWD1 eIF2A WD40_MABP1-WDR62_1st MIOS_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 NBCH_WD40
Other DBs
NCBI-GeneID: 133462779
NCBI-ProteinID: XP_061600199
LinkDB
Position
16:26506132..26512936
AA seq 427 aa
MADKDAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHVRNTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHL
LHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKT
VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE
DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGA
ADSEVQA
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcggataaagatgctgcgtttgatgatgcggtggaagaacgggtgatcaatgaggag
tacaagatctggaagaagaacactcctttcctttacgacctggttatgacccatgccctg
gagtggccgagcctcacagcgcagtggctgccagacgtcacaagaccagagggaaaggac
tacagtgtacacagactggttctggggacacacacctctgacgagcagaatcacctcgtc
attgccagtgtccagctcccaaatgatgatgctcagtttgatgcctcgcattatgacagt
gagaaaggagagtttggaggctttgggtctgtcagtggaaaaatagagattgaaatcaag
atcaatcacgagggagaggtgaacagagctcgttacatgcctcagaatccttgcatcatt
gccaccaaaactcctacaagtgatgtgctagtttttgattacacaaaacacccctccaaa
cctgacccttccggagagtgtaccccagacctgcgcttaaggggccaccagaaggaggga
tacggcctttcctggaacccaaacctcagcggatgtctcctcagtgcttctgatgaccat
gtaagaaataccatatgcctgtgggatatcagcactgtgccaaaggaagggaaaattgtg
gatgccaagacaatcttcacaggccacactgctgtggtggaagatgtctcctggcattta
ctccatgaatctctgtttggatcagtggcagatgaccagaaactcatgatctgggacacg
cggtccaacaacacctccaaacccagccatgcagtggacgcccacaccgctgaggtcaac
tgcctgtctttcaatccctatagtgagttcattctggccaccggctctgctgataagact
gtggctctttgggacttgaggaatctgaagttgaagcttcactcgtttgaatcgcacaaa
gatgagatcttccaggttcagtggtctcctcataacgaaaccatcctcgcctccagtggt
accgacagacggctcaacgtctgggaccttagtaagatcggagaggaacaatcgccagaa
gatgctgaggatggccctcctgagttgttgttcatccatggtggacacacggcgaagatc
tcagacttctcctggaaccccaacgagccctgggtcatctgttctgtatcagaggacaac
atcatgcaagtctggcagatggctgaaaatatctacaacgacgaggacccagaaggtgct
gcagattctgaggtccaggcatga

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