Cololabis saira (Pacific saury): 133463212
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Entry
133463212 CDS
T09849
Name
(RefSeq) spastin-like isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133463212
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
csai04812
]
133463212
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
133463212
Membrane trafficking [BR:
csai04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
133463212
Cytoskeleton proteins [BR:
csai04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
133463212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
AAA_lid_3
AAA_22
RuvB_N
AAA_5
TIP49
MIT
AAA_16
Mg_chelatase
AAA_14
IstB_IS21
AAA_24
NPHP3_N
AAA_2
DUF815
nSTAND3
AAA_17
AAA_33
DUF5906
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
133463212
NCBI-ProteinID:
XP_061600582
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All DBs
Position
17:9305350..9310611
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AA seq
474 aa
AA seq
DB search
MSAKIQASKSKDSGELIKNHHKQAFEHISKALRIDEDDKGEKGEAVQWYKKGIAELERGI
AVEITGLAGDQYDRAKRLQDKMMLNLTMATDRLALLETALASKRRSDPPPTRVPSQPKPK
SSTPAAGVSTNTRPAAAVRHPRPTDPKVTPRMGKSQNGKPAAGKQPPKRDMKNFKNVDSK
LANLILNEIVDRGASVSFDDISGQSLAKQALQEIVILPALRPELFTGLRAPARGLLLFGP
PGNGKTMLAKAVAAESNATFFSISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEV
DSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDEAVLRRFTKR
IYVTLPDEKTRLTLLQNLLGKHGNPLSTNELSSLAKVAAGYSGSDLTSLAKDAALGPIRE
LGPDQVRNMSASEMRNIKKKDFEDSLKRIKPTVSSGTLNMYTQWNKDFGDTTAF
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaaaatacaagcaagcaaaagcaaagacagcggggaacttattaaaaaccac
cacaaacaggcgtttgaacatatatcgaaggctttgaggatcgacgaagatgacaaagga
gaaaagggcgaagcggtccagtggtacaagaaggggattgctgagctggagagaggcatt
gcagtggagatcacgggactagcaggggatcaatatgacagagcgaagagactgcaagat
aaaatgatgttaaatctcaccatggctacagacaggcttgctctgttggaaaccgcactg
gcctctaaacggagaagtgatccaccaccaaccagagtaccttcacaaccgaagccaaaa
agcagcactccagcagcaggcgtgtccacgaacaccagacctgctgctgctgtccgacac
ccaagacccacggatccaaaggtaacccctcgaatgggaaaatctcagaatgggaaacct
gcagctgggaagcagcccccaaagagggatatgaagaacttcaagaacgtggatagcaaa
ctggccaacttgattctgaatgaaattgttgataggggggcctctgtatcatttgatgac
atctcgggtcagagtttggctaaacaagcacttcaagaaattgtaattctccctgcctta
agaccagagttgtttactgggctgagggcacctgcacgtggcttacttttgtttggccca
cctgggaatggtaaaaccatgctggccaaagcagtcgctgctgagtcaaatgccacattt
ttcagcattagcgctgccagtttgacttctaaatatgtgggagaaggagagaagcttgta
agagctctatttgcagttgccagagagttacagccctctatcatctttattgatgaagtg
gacagcttactttgtgagaggagggagggggagcacgatgcctcccgtcgtctaaaaact
gagttcctcattgagtttgatggggttcagtccggaggcgacgacagggtgctggtaatg
ggagcaactaacaggccacaggagctggatgaagcagttctaaggcggtttacaaaaagg
atttatgtgacattaccagatgagaagacaagattgacgttacttcaaaaccttttggga
aaacatgggaatcctttgagcacaaatgagctatcctctcttgcaaaagttgctgcgggt
tactcaggaagcgatctgacgtcattggctaaagatgctgcactcgggccgatcagagaa
ctgggaccggaccaagtccgtaatatgtctgccagtgagatgcgtaacataaagaagaaa
gactttgaggactccctgaagcgtattaagcccactgttagctcaggaactcttaatatg
tacacacagtggaacaaagactttggtgatacaacagccttttga
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