Cololabis saira (Pacific saury): 133463272
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Entry
133463272 CDS
T09849
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133463272 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133463272 (vps8)
Membrane trafficking [BR:
csai04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133463272 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Clathrin
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_5
Beta-prop_EML_2
zf-RING_2
WDR55
zf-C3H2C3
WD40_Prp19
PHD_4
EIF3I
zf-rbx1
zf-C3HC4_2
Beta-prop_NWD2_C
DUF1841
Motif
Other DBs
NCBI-GeneID:
133463272
NCBI-ProteinID:
XP_061600704
LinkDB
All DBs
Position
17:complement(39645906..39732984)
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AA seq
1393 aa
AA seq
DB search
MDMSRSPDAGTLLGASAQLNVMDMDSIDDKEFDIPQVDTPPTLESILSQVEDEEDAFVLE
DTCVMNTDNMDTHSWDTSSLASSDSGDPAHLKRKRKTLDLNTGVHGSVLRLSLLKGISAQ
IVAAADKVDAGLPTAITMGGVIAVGTSHGLALVFDTNQALRLCLGTKSTGAEFGAISAIS
INHDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELAFRRVMGMRSCDSRCLFSGSKGEVCCVEPLRAPPDFRDHPITQYCLLAMASLTKI
LVIGLKPQLNVWMTFPYSKSDASSIPQLAWQFVPVQKTVNPILAFSKGDTVHFLLVKKEE
MGTIHVIKQRHLHLSCDIISLNWINGRTLVLVDSHEKLQVVDRPTQEILETQDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQILCLGTKSAHIMALRTWKERIDF
LLKKEHFVEALSLAWSFHEGTAKAVVGLQGDPQKRKGVVVNKMVETLLQFTEYALKKCPE
HGKIQLMEQHFQDVVPVLVDYCLLLQKVDLLFNQLYVHLLENAVAKGVFLESLEPYIITY
RLGHLPTPVIRDLLSHYHDNGMMDSLERCIVHLDVTSLDIQQVVQMCWQNQLYDAMIYVF
NRGMNDYITPMEKLFAVISPGVKEGRSLTDKDVVMGNKLLVYISCCLAGRAYPLGDIPED
LVVQVKNQVFEFLIRLHSGDSSEEEEVFPFIHTLLHFDTREFLNVLAMTFDDFKNDKQAL
EYQQRIVDILLQVMVDSPDFTPSQVGGLFTFLARQLAKRNNTLFVNRKLFDQVLEFLCCP
DDDARHAERQQVLLELLQVGGVVQFDEERLLALAEKAKFYQICEVLFEKKHLYDSIVDCY
LKDPLRKREVFNYIHDLLTTPGCSSEEKHKVKHKVLQHVQDLVSMDPRKSADLIQCHFKD
EVPVIISEIQDDQILFRFLSCLLEPREGFSSCSVDQEIHELLLDLLCRFDPQQLLNFLHT
SQHYRLEEAIQIAEKYHCNEATAYLLEKKGDIHGAFAQLLQILKERLHVLTSEGEEPAER
RGEEDGDPARTRLQDCLKNIISFCNRTCQNLDQQQRKELWFPLLDTMMVSQKEMKEPRHS
SEGLKKMTLEVLNSMSIFISLPAIIQQILQDPLYGKGKLAEIQGLILGMLDTFSYEQTLL
ETTTSLLNHDLHWSLAHLRSAVRRGLHPRQDFCNICLQNYKRRQDLSEQIVVFSCGHLYH
VQCLQQKECGWGAASELLQQWRCYKCSSHGGKGRPTEPNRARTTSLAQSRITSTHDSIPV
SHGKKVATVVSLDLQQELSWDETRSLYRGPSRLSILSELSQGQTGEPAGRPFPVQPVPDS
CYLKLCPPPLLEE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggacatgtctcggtctccggacgcggggacactcctgggtgcctctgctcagcttaac
gtgatggacatggactcgatcgatgataaggagtttgacattcctcaggtggacacccct
cccaccctggaaagcatcctcagtcaggtggaggatgaagaggatgcatttgttctggag
gacacctgtgtcatgaacacagacaacatggatactcactcctgggacacgtcctccctc
gccagctctgacagcggagacccggcacacctgaaacggaagaggaagacgctggatctg
aacaccggtgtccacggctcggtgctcaggctgagtctgctaaaaggcatctctgcacag
atcgtagctgctgctgacaaagtggatgctggacttccaactgcaatcacaatgggcggc
gtgatcgctgtgggaacgtctcatggtctggctctggtctttgataccaaccaggctctc
cggctgtgcctgggaaccaagagcactggagccgagttcggagccatatctgccatcagc
atcaaccatgactgcacacggctgctctgtggttttgctaaaggacagattacgatgtgg
gatcttgccaatgggaagcttctgagaaccatcactgatgctcatcctccaggaacagct
atcctgcacgttaagttcacagatgacccaactctggctgtgtgcaacgacagtggaggg
tctgtgttcgaactggctttcaggagggtgatgggaatgaggtcatgtgactcgcggtgt
ctcttcagtggctctaaaggggaggtgtgctgcgtggaacctctccgagctcccccagac
ttcagagaccatcccatcactcagtactgtctgctggctatggcctctctgaccaagatt
cttgtcattggtctgaagccccagctgaacgtttggatgacatttccttacagcaagtct
gatgcatccagtattcctcagctggcctggcagtttgttcctgttcagaagactgtcaac
cccatcctggccttctctaaaggagatactgtccacttccttctggtcaagaaagaggag
atgggaaccatccacgtgatcaaacagagacacctccacctcagttgtgacatcatcagc
ctcaactggatcaacggtcggaccctggtcctggttgacagccatgagaaactccaggtg
gtagaccggcccacgcaggagatcctggagacccaggacctggagcaggtgcagctggtc
tacaacagcagacacttcaaatcgctggccactggagggaacgtctcccaggccctggcc
ttggtgggagaaaaggcctgctaccagtcagtgtccagttacgcagggcagattctgtgt
ttgggcacaaagtcggctcacatcatggctctaaggacctggaaagagcgcatagacttc
ctcctgaagaaggagcactttgttgaagcgctgtctctggcctggtccttccatgagggc
acagccaaggctgtggttggtctgcaaggagatccacagaaaaggaaaggagttgttgtt
aataagatggtggagactctcctccagtttacagagtacgctctgaagaagtgtccagag
cacggcaagattcagctgatggagcaacacttccaggatgtggttccagtcctggtggat
tactgcctactgctgcagaaagttgacctgctcttcaaccagctttacgtccacctgctg
gagaatgccgttgctaagggcgtcttcctggagtctctggagccttatattatcacctac
cgcctgggccatttacccacccccgtcatcagggaccttctgtcacattaccatgacaac
gggatgatggacagcctggagaggtgcatcgtccatttagatgtgaccagcctggatatc
caacaggtggtccagatgtgttggcagaaccagctgtatgatgctatgatatacgtcttc
aatcgtggtatgaatgactacatcactccaatggagaaactgtttgctgtgattagtcct
ggagtgaaggaggggaggagcctcacagacaaggatgtggtgatggggaacaaactgctg
gtgtacatcagctgctgtcttgcaggaagagcttatccacttggagacatccctgaagat
ctcgtcgttcaggtcaagaaccaggtgtttgagtttctgatccgcctccactccggtgac
tcttcagaggaggaggaagttttccccttcattcatacactccttcacttcgatacccgc
gagtttctcaacgtgctggccatgacgtttgatgactttaagaatgacaagcaggctctt
gaataccagcagagaatagtggacattttactccaggtgatggtggacagcccagacttt
actccgtcccaggtgggcgggctcttcacctttttggctcgccagttggccaagagaaac
aacacactttttgtgaaccggaagctatttgaccaggtgctggagttcctctgctgtcct
gatgatgatgctcgacacgctgaacgacagcaggtcctgctggagctgctgcaggtgggc
ggtgtggtccagtttgatgaagaacgcctgctggctttggcagagaaagccaagttctac
cagatctgtgaagtcctttttgagaagaaacacttgtatgacagtattgttgactgctac
ctgaaagacccgctccgaaagcgggaggttttcaactacattcatgatcttctgaccacg
ccaggctgtagttcggaggagaaacacaaagtgaagcacaaagttctccagcacgttcag
gacctggtgagcatggatcccaggaaatcagctgatctgatacagtgtcatttcaaagac
gaggttccggtcatcatctctgagattcaggacgaccagattctcttcagattcctcagc
tgtcttttggagccgcgggaaggattcagctcatgctcggttgaccaggagatccatgag
cttctgctggacttactgtgtcgcttcgacccccagcagctcttgaacttcctccacacc
tcccagcattacagattggaggaggccatacagatagcagagaagtaccactgtaatgag
gccaccgcctacttgttggagaagaagggagacattcatggagcctttgcccaactgctg
cagatcctgaaagaaagactgcatgtcctcacgtctgaaggtgaagaaccagctgaaaga
cgaggggaggaagatggagatccagcacggactcgactccaggactgtctgaagaacatt
atttctttttgtaatcgcacctgccagaacctggaccaacagcagaggaaggaactatgg
tttccacttctggacaccatgatggtttctcagaaagaaatgaaggagcccagacacagc
tcagagggactaaagaagatgactctggaggttcttaacagtatgagtatcttcatttct
cttcctgccatcatccaacaaatcctacaggaccccctttatggaaaaggaaagctggca
gagattcaaggcctcatcctgggaatgctggacacattcagctatgaacagactttactt
gaaactaccacgagtctgctgaaccatgacctccattggtctctggcacaccttcgctct
gccgtcagaagagggctccacccgcggcaggacttctgcaacatctgcctgcagaactac
aagaggaggcaggatttatctgagcagatcgtcgtcttcagctgtggccacctgtaccac
gtgcagtgcctgcagcagaaggagtgtgggtggggcgctgcgtccgagctgctgcagcag
tggaggtgctacaagtgttccagccacggaggaaagggccgccctacagaaccaaacaga
gcacgcaccacatctctggctcagagtcgcatcacatcaacacatgactcaattccagtg
tctcatgggaagaaggtcgctactgtagtttcactggaccttcagcaagaactgtcctgg
gatgagacgcgctcgttataccgaggaccgtccaggctgtccatcctctcagaactgtcc
cagggtcagacgggtgagcctgcaggacgaccgttccccgtccagccggtcccagacagc
tgctacctgaagctctgtccgccgccgctactggaagaatag
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