Cololabis saira (Pacific saury): 133463348
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Entry
133463348 CDS
T09849
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133463348 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csai03400
]
133463348 (msh6)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133463348 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
DUF6886
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
133463348
NCBI-ProteinID:
XP_061600825
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All DBs
Position
17:complement(7342704..7353957)
Genome browser
AA seq
1386 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLSKPKLKPSPSPAEADLPSSVEKSSSSPKEEAKLVQGQRPNKTP
KVNQKSGAKAVNKGFKKLFGDKGPKTENGSSTCPFKAGALVWAKLEGHPWWPCMVVPQPL
TGQQMRGRGGQQRIHVHFFDEPPTRGWVRTKYIREYQGSDSSDVKPGGVFFSSKPVIRRA
MELADGFIFDSPEKRLKMPLCMDPSDEEEDDDDEEMEIDKSTVTDEEVSDEDEKRSEEEK
LPKVSRRASRASTEKGSKAKRRRIIVASDSDGSDEEFKPENASCSTEDEEEEVTVSSEDE
KEEESTQESEVESPIKPVKRKRPAEKEKPVNPKTKTFAGPSAAPKRAPAAIVANTKSRLS
AFSAPDNFESQANGSAAVGGETVWDHEKLEWLKEGKRKDSKRRRQTEDDYDPTTLYVPED
FQNRNTPGMRRWWQLKSEMFDAVLFYKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGF
PEIGFGRFSDGLVQKGYKVARVEQTETPDMMEARCKTMAKPTKFDRVVRREVCRIITRGT
QTYSVLDGAPSESQSKFLMSLKEKSEGENSGGHRTYGVCFVDTSVGYFHIGQFPDDRHCS
RLRTLIAHFSPAEVLFEKGNPSVETRKILKVSLSSALQEGLNAGTQFWDAQKTLKTLSEE
DYFKETTGEDQTGKGFLPAFLKTMTSESDSLCLTPKEGYELALSAFGGCIFYLKKCLVDK
ELLSMANFEEYVPVDVELKKAAGPASFFAQTSLRMVLDGVTLTNLEIFQNGLGGTEGTLL
DRLDTCSTPFGKRLLKQWLCAPLCNPKSIRDRLDAVEDLMAAQAQATEVSDLLKKLPDLE
RLLSKIHSLGTPLDQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISIFAPIFG
QFQSTLLSQVVSLKSEKTGLFPDFSAELKRWETAFDHQKARSTGVITPKAGFDPEYDQAL
SEIKNCERDLQDYLERQKKRLGCKSMSYWGTGKNRFQMEVPDSVSDRNIPEEYEVKSTKK
GWKRYVTKETESLFAELQGFEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVLDVLL
ALTRYSQGGDGPMTRPQLVLPHQDDNQAAPFVKLTGSRHPCVTKTFFGDDFIPNDIFIGC
PGSSEGDEEGGCASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCFVPAESLSFTPVDRVF
TRLGASDRIMAGESTFFVELSETASILHHATEHSFVLLDELGRGTATYDGTAIASAVVKE
LAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGAC
PKSYGFNAARLASLPEEVIQAGHKKAREFEKSTISLRLFKKLCQFAEDVTQDGTHFTSLV
QLLNTL
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcgctgttcaactttttcaccaagtctccgccgctctccaagccc
aagctgaagccgagcccctctccggccgaggcggacctgccttcctccgtggagaagtcc
agctcttctcccaaagaagaagccaagctggtacaaggacagcggccaaacaagaccccc
aaagttaaccagaaaagtggtgccaaggctgtgaataaaggattcaagaagttatttggc
gacaagggcccgaagactgagaatggcagctcgacctgcccattcaaagctggtgccctt
gtgtgggcgaaactggaaggacacccttggtggccctgcatggttgtaccgcagcccctg
actggacagcagatgaggggacgtgggggacagcagcgcatacatgtccatttctttgat
gaacctcctaccaggggatgggttcggaccaaatacatcagagagtaccaaggctctgac
agcagtgacgttaaacctggaggggtgttcttcagcagcaaacccgtgatccgccgtgca
atggagcttgctgatggatttatttttgacagtcctgaaaaaagattaaagatgcctctt
tgcatggatccatctgacgaggaagaggacgacgatgatgaagaaatggagattgacaag
tcgacagtgactgatgaagaagtgagtgatgaggacgaaaagagaagtgaggaggaaaag
ctgcctaaagtcagtcgacgtgcatcccgtgcttcgacagaaaagggaagcaaagccaag
cgccgtcgtattattgtagcctctgacagcgacgggtcagatgaggagtttaaaccagaa
aatgcttcatgtagcactgaagatgaggaagaggaggtgacagtgagcagtgaagatgag
aaggaggaagagagcacccaagagtcagaagtagaaagccccatcaagcccgtaaagcgc
aaacgtcctgcagagaaagagaagcctgtgaatccaaaaacaaagacatttgccggccca
tcggctgcaccaaaacgagcaccggcagcaatcgtggctaacacaaagtctcgtttgtcc
gccttttctgctccggacaactttgagagccaggcgaatggatcagcagcagtcggaggg
gaaacagtttgggatcacgagaagctggagtggctgaaggaaggaaagagaaaagatagt
aaaaggcggcgacagacggaagacgattatgatccgaccacactgtatgtgcctgaagac
tttcaaaacagaaacactcctggtatgcggcggtggtggcagctcaaatctgagatgttt
gatgcagtgcttttctacaaggttggaaagttttatgaactttaccacatggatgcagtg
attggagtcaatgagcttgggctgacgttcatgaagggggcctgggctcactcaggcttt
ccagagattggctttggacgtttctcagatggattggtccaaaaaggctacaaggtggct
cgtgtggagcaaacggagaccccagacatgatggaagcacgctgcaaaaccatggccaag
cctacaaaatttgaccgcgtagtaagaagagaagtgtgccggattatcacgcgcggcaca
cagacctacagtgtgttagacggtgctccttcagagtctcagagtaagttcctcatgagt
ttaaaggaaaagtctgaaggagaaaactctggtggccaccgcacctatggtgtttgtttt
gtggacacctctgttggctatttccacatcggccagttccctgatgaccgtcactgctct
cgtcttcgcaccctgatcgcacacttttctcccgctgaggtcttatttgaaaagggcaac
ccatccgttgaaacacgcaaaatactcaaggtgtctctgtcctctgctcttcaggaagga
cttaatgcaggaacgcagttctgggatgctcagaaaaccctcaaaactctctcggaagaa
gattattttaaagagaccactggagaagatcaaaccgggaaaggttttctcccagctttt
ctaaaaacgatgacctctgagagcgattcactgtgcctaactcccaaagagggttacgag
ctggcgctgtcggctttcgggggatgcatcttctaccttaagaaatgtctggtagacaaa
gagttgctgtccatggcaaactttgaagaatacgtccccgttgatgttgagttgaagaaa
gctgccggacctgctagtttctttgcacagacgtctctgcggatggtccttgatggagtg
acgctgacaaatctggagatctttcagaatggtttggggggaacagaagggaccctgctg
gatcgtttagacacctgctctacccccttcggcaagaggctgttgaaacagtggctgtgc
gctccgctatgtaaccccaagtccatccgggaccggctggatgcggtggaggacttaatg
gccgctcaggctcaggcgactgaggtctccgatctgctgaagaaactgccggacttggag
cgtcttctgagtaaaatccacagtctcggtactcctctggaccaggaccaccccgacagc
agagctgttctctacgaggaggtcacttatagcaagcgcaagatagcagacttcctttca
gcgctggaaggtttcaaaactatgcaggagatcatttctatctttgctccaatctttggg
caatttcagtccacgttgctcagtcaagttgtgagtctgaaaagcgagaagactggcctc
ttcccggatttctctgctgaactcaagcgctgggagaccgcgtttgaccaccagaaagcc
cgctctaccggcgttataacccctaaagctggctttgaccccgagtacgaccaagctctg
tcagaaatcaagaactgtgagcgagacctgcaggattatctagagaggcagaagaaaaga
cttggctgtaagagcatgtcctactggggaactgggaaaaaccgctttcagatggaagtt
cctgacagcgtctcggacaggaatatccccgaggaatacgaggtgaagtctacaaagaaa
ggctggaagcgttacgtgacaaaggagaccgagagcctgttcgcagagctgcagggattt
gaggagaagagagatgcagcgctgaaagactgcatgaggagactcttctacaactttgat
aagaattacagagactggaagactggtgtggagtgcatggcagtgcttgatgtgctgttg
gctttgacgcgctacagccagggtggagatggtccgatgaccaggccacagctggtgctt
ccccaccaggacgacaaccaggcggcacccttcgttaaactcacgggatcccgtcacccc
tgtgtcactaagaccttttttggcgacgacttcatccccaacgacatcttcatcggctgc
cctggaagcagtgagggtgatgaggagggaggctgtgcttcctgtgtccttgtcacagga
ccaaacatgggtggaaagtccactcttatgcggcagtgtgggcttgtgatcattctagct
cagcttgggtgctttgttccagcagagagcctcagtttcacaccagttgacagggtcttc
accagactgggagcctcagatcgaatcatggctggagagagcaccttcttcgtggagctg
agtgagactgccagcatcctgcaccacgccactgaacactcatttgtgctccttgatgaa
ttaggaaggggcactgccacatatgatggcacagcgatcgccagcgctgttgtgaaagag
cttgctgagaagatctgctgtcgcacacttttctcgacacactaccactctctggtggag
gattatgccaacaaccctgctgtgcgtttaggacacatggcatgtatggtggagaatgag
tgtgaagatccgagccaggagacgatcacattcctctacaagttcatcaccggtgcctgt
cctaaaagctatggattcaatgctgccagactggcaagcctccccgaggaagtcatacag
gcagggcacaagaaggcccgagagtttgagaagagcaccatcagcctgagactcttcaag
aagctctgccagtttgctgaagatgtcacacaggacggcacacactttacttcacttgtt
caacttcttaacacactgtag
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