Cololabis saira (Pacific saury): 133463416
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Entry
133463416 CDS
T09849
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csai00536
]
133463416
Glycosaminoglycan binding proteins [BR:
csai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133463416
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133463416
NCBI-ProteinID:
XP_061600933
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Position
17:complement(40806401..40903751)
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AA seq
574 aa
AA seq
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MGLKGHPGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGQKGDMGQR
GAKGLLGEPGLKGEKGVCGDYTHRMLPITVRNMPAISPLILKRLKQGEPGAQGPPGPPGP
PGLPGNPGFDGASGPPGKPGEPGKPGKDPRLLPGLKGEPGVPGQKGDRGDVGSAGPEGPK
GHEGKRGLPGDTGGKGETGFPGAPGLKGQAGIPGIPGIPGKRGYRGERGEPSLPAPGIKG
EPGSPGQPGLMGSKGDKGDRGDKGEDGPEGPVGSRGPPGPTGEPGRAEIQSNENYIRNIP
LMGPPGLPGPPGSPGGPGSKGEVGLPGAPGLDGEKGPRGKPGEPGPGGPAGPEGPRGEGV
MGSPGPKGDKGDMGPSGSSGLDGPTGEKGTTGSPGPIGLPGIMGPKGEAGDGGRSELIYG
PPGLPGPPGPVGPAGSQGSSGPKGEPGIGIKGEKGATGQKGDKGDRGHLGLPGAHGLDGR
PGAVGLIGPAGVSGPAGPKGERGEKGDAGFSGPIGPQGIPGLVGPHGLKGNRGERGKKGN
RGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgggcttaaagggacacccaggggagaagggtgcaccaggagagccgggtctctccatc
atcggaccgcgaggacctcccggacaacctggcacgagaggatttccaggcttcccgggt
cctattgggttggacggcaagcctgggcagaacggacaaaagggagacatggggcagcgt
ggagctaaaggactcctgggggaaccaggactcaaaggcgagaagggtgtctgtggagac
tacacacaccggatgttgcccatcaccgtgcgcaacatgcccgcaataagccctctaatc
ttaaaacgcctcaagcagggtgaacctggagctcaaggacccccaggacctccaggaccc
ccggggcttccaggtaacccgggcttcgatggagccagtgggcctccgggtaagcctggg
gagccgggcaaaccaggaaaagacccccggcttttaccaggactgaagggtgagccggga
gttcctggacaaaagggggacagaggtgatgtcggctcagcaggccctgaaggcccaaag
ggacatgaagggaagaggggtctcccaggagacacgggaggcaagggagaaacaggtttc
ccaggtgctcctgggttgaagggccaggctggaatccctggtatacctggcatccctggc
aagaggggctacaggggggagagaggagagccgagccttccggctccaggaatcaaagga
gagccaggttcaccgggacagccaggcttaatgggatccaagggcgacaaaggtgaccgg
ggagataagggagaggacggtcctgaaggcccagtcggatcaagaggtcctccaggccca
actggggagccaggaagggctgaaatccagagcaatgaaaattatatccgcaacataccc
ctgatgggtccccctggattacctggacctcccggctcgcctggaggccctggttccaag
ggtgaagtcggtctacctggtgctcctggactggatggagaaaagggacccagaggaaag
cccggagagcctggtcctggaggcccagctggtcccgaaggtcccagaggagagggtgtc
atgggctcaccaggacccaagggggacaagggagacatgggtccatctggatcatctggt
ttagatgggcctacgggtgaaaaggggactacggggtccccgggccctattggattacct
ggcatcatgggtcccaaaggtgaagctggagacggagggaggtccgagctgatctatggt
cccccggggctcccaggacctcccggaccagtcggccctgcaggatctcaaggatcttca
gggcccaagggagagccgggcataggtatcaaaggagagaagggagccacgggccagaag
ggggacaagggggacagagggcatcttggactcccaggggctcatgggttagacggcaga
cccggtgcagtgggtctaataggaccagcgggcgtctcaggaccagccggaccaaaggga
gagagaggtgaaaagggagatgcaggtttttcaggaccaattgggccgcaaggcatccct
ggtttagtaggaccacacggactcaaaggaaaccggggagagaggggcaagaaaggcaac
aggggggccaaaggggataagggagaccaaggagcacctggattagatgccccctgtccg
ttgggagacgacggcttacctgtaccagggtgttggaataaatga
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