Cololabis saira (Pacific saury): 133463961
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Entry
133463961 CDS
T09849
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csai03036
]
133463961 (chd9)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
133463961 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_CHD1_Hrp3
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
133463961
NCBI-ProteinID:
XP_061601783
LinkDB
All DBs
Position
2:complement(42061055..42180470)
Genome browser
AA seq
3021 aa
AA seq
DB search
MDFFDDPNLFVGGLEGLDEDGFTAAPSLVDELNLAADFEPLQVEALAPGKHHQDMMTPAS
IPQALPGYSQPLGHYVAVKAENPAGQTFPGSRSVSCGMIAEQRGQHHNAAVSQVPQSNGL
FCNSSSPMWGNQDQNGNVFHPLSQQHQHQQQQLCHQQLHNQQLRARQHTQQQNHSYHHQQ
EEQQHRLRQQQLQQQQNQQQQLLNQHQQISTPTVALLQQQHHTFAFHQGGHSSRQQQMHH
SQPQMQHQITMNESQFHARVIPRKPYLEGQTPSLSGASLQAPPPPQQQQQRQQQQQGSYQ
LVRRGQAFPGPGLEDSSMSFSAHSSSIVHSLPPCSVSSANAYQPAPYPAYPGEAEIPGLS
QQPLSSASASRPTTTQPLNSTEPELPGTACQFQSPPLMSQLPTRTTVSQAEECPYRALHS
SGETQGNCKSSEMFGESMNCYPSLASHLPSEQPRSCGAINTNGYQALGDALLPAEAPHGG
LEGLEPTDLLPDLLPQLEDAFRQQEESNYSWVDSSQEKGYGNSTSTPFDCKDEKPRKNTN
GPGIQMRVHSPPVKSSSSSSSSSSSSSSSSSSSSSSSSSEKRLARRHNPMDSTPQDKQEK
ANRIISEAIAKARQRGEKNIPRVMSPESFPSSSAQHKRRNREHKGNGKARPREKVCRKAC
IVPTAKPKQKTKIGKIVIKIGKKKKRKQESSEEESDNDPPPRHATKDVDSKRRSNRQVKR
KKYAEELEARMSDEEVKVIVRAKKANPAASKQPAVQLFVENPSEEDAAVVDKIMSSHIIK
KEVSPGVTVEVEEFFVKYKNYSYLHCEWATEQQLVKDKRIQQKIKRFKIKQAQRALFFAD
MEEDPFNPDYVEVDRVLEVSYCEDKDTGEEVVYYLVKWCSLPYEDSTWELKDDVDQTKIE
EFEQLQAAKPDSRRMDRPPANLWKKREQSRQYRNGNTLRDYQLEGVNWLLFNWYNRRNCI
LADEMGLGKTIQSITFLEEIYRVGIKTPFLIIAPLSTIANWEREFRTWTHLNVIVYHGSM
VSRQMLQQYEMYFRDAQGRAIRGAYKFQAVITTFEMILGGCPELNAIEWRCVIIDEAHRL
KNKNCKLLEGFKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPARFPSENNFMHEFGDLK
TEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS
KGAGQANMPNLVNTMMELRKCCNHPYLIKGAEEKILEDFREVHSPTAVDFHLQAMVQSAG
KLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID
RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVK
VYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLGGSTGGGAVQQQQLSKKEIED
LLRRGAYGAIMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTD
ISLDDPNFWDKWAKKADIDMEMVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGESDG
DETKPKLRRNHDRGNSYGRTECFRVEKNLLVYGWGRWKDILNHGRFKKQLTEWDVESICR
ALLSYCLVHYRGDDKIKSFMWDLIAPGEDGSTKELQNHLGLSAPVPRGRKGKKMKTQSSS
FDIHKAEWLRKHNPEHMLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSLAQKVLDGG
DSSEVKIWVPDPDHSDLPALWWDAIADKCLLLGIFKHGYEKYNTIRADPTLCFLERVGRP
DEKAIAAEQRSNDFMDGDVDDPEYKPAPALLKDDMEDDASSPGDLVVSDNAGDAAPVTEG
QTTYWPSPSVLTARLRRLITASQRYTKSRQILQIHQTQTQTQSQSQQALVLSAPLCPLPP
TVNDTLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPNLGRFDWTKFRAMARLHKK
TDESLQKYLCAFTAMCRRVCRLPPKDGDSGADPSLTIQPITEERASRTLYRVELLRQVRE
QVLRHPLLFERLSLCQLSSDLPVWWEAGAHDRDLLVGAAKHGVSRTDYHILRDPELSFMT
AQRNYSQTKAAQQQGRPPAALAALAGSPLPPPAHRDPDPGELVPKVEPPSEEEEGKGIKA
EGWSPPPAPATPTGLEEKPVSMEMDIDRQMAAARTKPLTPNSSEKKPKKSSKRGRREARR
GSGSDSDGSSSSSSSRSSSSSSSTSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSSDSE
SEGEEEKKKVPAAAGVKAFDEDSVASLSATRDEAQDPHVAENGVSSNSFHPFQGGGYMLA
ASYWPKDRVIINRLDSICQAVLKGKWPGPRRVYEPGGAVASFYTTKLLDNANSLCEDPSA
SPQGSKVTKHVAENKEFSVKLNDQEGGLKLTFQKQGLPLKRPLESEEGPQAQQQYLARLH
ELQSASDTGLADISNPQSSLPTVSPGLTGQMRLNGALDGQPIVKKRRGRRKNVEGMDLLF
MNRNRVPAVNHQVPPGWGGIGQVGLSGAAVPGVSQSAGPAPADSESRVPVINLKDGTRLA
GDDAPRKKDLESWLKEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDV
NSLTGEERVQIINRRNARKIGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPES
MFDRILTGPIVPEEVSRRGRRPKNPLAKAAAAAAAPNAAASSVGLNPLLANGLLSGMDLT
NLQAFQQNLQSLQSLQLTAGLLGLPSDASNLAASNLAAMFPMMLSGMTGLPNLIGMSTLL
GKQAQEGVGGSEEKTKGNASGGAEEPSATQAPSHTSDPKGERTEGSDMTPSSTSSSASPA
TATQSASAASAATSHPLSLNPLLLSSMLYPGMLLTPGLNLPVSATQPQSSNSDLSTLPSA
AAPPPATSQSPSLETEKPRAARDAEEEDEVLEEALDEDDDEEDDSAEQKENSGPEGSAKA
DSSSSDSGSSSSDNSDSSDED
NT seq
9066 nt
NT seq
+upstream
nt +downstream
nt
atggatttctttgacgaccccaacctcttcgtgggaggtttggagggactggacgaagat
ggcttcactgcagcgccgtcgcttgtggatgagctcaacctcgctgcggactttgaaccc
ctgcaggtggaggccctcgccccggggaagcaccatcaggacatgatgacaccggcctcc
atcccacaagcgctgcccggttacagtcagccgctgggtcattacgtcgctgtcaaggcg
gagaatcctgcaggacaaacatttcccggctctcggagcgtaagctgtggcatgattgca
gagcaacgcggccagcaccacaacgccgccgtcagccaggtacctcaatccaacgggctg
ttctgtaacagcagcagtccgatgtggggcaaccaagaccagaatgggaacgtgttccac
cccttatctcagcagcaccaacatcagcaacaacagctttgtcatcagcaactgcacaac
cagcaacttcgtgccaggcagcacacgcagcagcaaaaccactcttatcaccaccaacaa
gaggagcagcagcacaggctgcgacagcagcagctgcaacagcagcaaaatcaacagcaa
cagctgttgaaccagcaccaacagattagcacaccgactgttgctctgctgcaacagcag
catcacactttcgcttttcaccagggaggtcattccagtcgccaacagcagatgcatcac
tcccaaccgcagatgcagcaccaaataaccatgaatgagtcgcagtttcacgccagggtt
attccaagaaagccttacttggaaggtcagactccttctctgagtggagcttccttacaa
gcgccgccgccgccgcagcagcaacagcagcggcagcagcagcagcagggtagttaccag
ttggtccggagaggtcaagccttccccggaccaggtttagaagattctagcatgtcattc
tctgcacattcatcgtctatagttcactccctgcccccatgctctgtcagctctgctaat
gcttaccaaccagctccgtatcctgcctaccccggagaggcagaaatacccggtctgagt
cagcagcccttatcctccgcctcagcgtcgaggcccaccaccacccaaccactcaactcc
accgagcccgagctgccggggacggcgtgccagttccagtcgcccccacttatgagtcag
ctgcccaccagaacaaccgtcagccaggccgaggagtgtccctaccgggccctgcactcc
tccggggaaacccagggaaactgcaagtcatccgagatgtttggcgagtcaatgaattgc
tatcctagcctggcgagccacctgccctctgagcagcctcggagctgtggggccatcaac
actaacggataccaagctttgggagacgctctactgccggcggaagccccgcatggaggt
ttggagggtttggagcctactgaccttttacccgacttactcccccagctggaagatgct
ttcaggcagcaggaggagtccaactactcctgggtcgactccagccaggagaagggatat
gggaatagcacatcaacacctttcgactgcaaggatgaaaagcctcgaaagaacaccaat
ggtcctggcatccagatgcgggtccacagcccgccagtgaagagcagctcgtcgtcctct
tcatcgtcgtcttcatcgtcatcctcctcgtcatcctcctcgtccagctcctcgtcggag
aagaggttggcgcggcggcacaatccgatggattcaactcctcaggacaagcaggagaag
gccaacagaataatatcggaggctattgctaaggcccggcagcggggggagaagaacatc
ccgcgggtcatgagtccggagagcttccccagctcctcggctcagcacaaacggcggaac
cgtgagcacaaaggaaacggcaaggccaggccccgggagaaggtctgtaggaaggcctgc
atcgtacccaccgccaagcccaagcagaagaccaagatcgggaaaattgtcatcaagatt
gggaaaaagaaaaaacgaaaacaggagtcttcagaggaggagtcggataacgaccctccc
cctcggcacgccaccaaggacgtcgactcgaagaggcggtctaatcgccaggtgaagaga
aagaagtacgctgaagagctggaggccaggatgtcagacgaggaagtcaaggttatcgtc
agagccaagaaagccaaccccgcagcgtccaagcagcctgctgtgcagctctttgttgag
aatcccagtgaagaggatgctgctgttgtggacaaaatcatgtcttctcatatcattaag
aaggaggtgtctccaggggtgacggttgaagtggaggagttttttgtaaaatacaaaaac
tactcctacctacactgtgagtgggcaacagagcagcagctggtgaaggacaagaggatt
cagcagaagatcaaacgcttcaagataaaacaggcgcagagggcgctcttcttcgcagat
atggaggaagacccctttaaccctgactacgtagaggtggacagagtgctggaggtgtct
tattgcgaggacaaagacacaggggaggaggtggtgtactacctggtgaagtggtgttct
ctgccgtacgaggacagcacctgggagctgaaggacgatgtggatcagaccaagatcgag
gagtttgagcagctgcaggcagccaagccagactcccggaggatggaccggcccccggcc
aacctgtggaagaagagggaacaatcacggcagtacaggaacggcaacacgctcagggac
taccagctcgagggggtcaactggcttctctttaactggtacaacagacgcaactgcatc
ctggcagacgagatgggcctgggcaagaccatccagtccatcacattcctagaggagatc
tatcgcgtcggcatcaaaacgcccttcctcatcatcgcccctctttccaccatcgctaac
tgggaacgcgagttccggacctggacccacctcaacgtgatcgtgtaccacgggagcatg
gtcagccggcagatgctgcagcagtatgagatgtacttcagggatgcacagggtcgtgcc
attcgaggcgcctacaagtttcaagccgtcatcaccacgtttgagatgatcctcggaggc
tgtcccgagctcaacgctatagagtggcgctgcgtgatcatcgacgaggcccatcgcctc
aagaacaaaaactgcaagcttctggaaggcttcaagctgatgaaccttgagcacaaggtc
ctgctaacgggtacgcctctccagaacacggtggaggagctcttcagcctgctccacttc
ctggaaccagcacgtttcccctctgaaaacaacttcatgcacgagttcggagacctcaaa
accgaggagcaggtacagaagctccaggccatcctgaagcccatgatgctgcggcgtttg
aaagaggacgtggagaagaagttggcaccgaaagaggagaccatcatcgaggtggagctc
accaacatccagaagaagtactatcgcgccatccttgagaagaacttctccttcctctct
aagggggcgggccaggccaacatgcccaacctggtcaacaccatgatggagctgcggaag
tgctgcaaccacccctacctcatcaaaggggcagaagagaaaatcctggaggacttcagg
gaagtgcacagtcccactgccgttgactttcacctgcaggcgatggtgcagtctgccggg
aagttggtcctcatcgataaactgctgcccaaaatgaaggctggaggccacaaagtgctc
atcttctcccagatggtgcgctgcctggacatcttggaagactacctcattcagagaagg
tacttgtacgagcggattgatggacgtgtccgtgggaacctgcggcaggccgccatcgac
cgcttcagcaagcccgactccgaccgcttcgttttcctcctgtgcacaagagccggcggc
ctgggaatcaacctcacggcggccgacacctgcatcatcttcgactccgactggaaccct
cagaacgacctgcaggcccaggctcgctgccatcggatcggtcagaacaaggcggtgaag
gtgtaccgcctgatcaccaggaactcgtacgagcgggagatgttcgaccgcgccagcctc
aagctgggcctggacaaagccgtgctgcagagtatgagcggccgagataacagcctggga
ggaagcaccggcggaggggctgtgcagcagcagcagttatctaagaaggagattgaagat
ctgttgcggcgaggcgcttatggggccatcatggatgaggaggacgaaggggccaaattc
tgtgaagaagacatcgatcagatcctccagcgtaggacgaagaccatcaccatcgagtct
gagggacgaggctccacctttgctaaggccagttttgtggcatctggaaaccgcacagac
atctctctggatgaccccaatttctgggacaagtgggcgaaaaaggctgacattgatatg
gaaatggtcaatggcagaaatagcctggtgattgacacgcctcgggtcaggaagcagacg
aggcccttcagcgccaccaaagacgagttagctgagctttcagagggcgaaagtgacggc
gacgaaaccaaacctaaacttaggcggaaccacgatcgcgggaacagctacggccgcaca
gagtgcttcagggtggagaagaacctgctcgtatacggatggggccgctggaaggatatc
ctcaaccacgggcgctttaagaaacagttgactgagtgggacgtggagtccatctgcagg
gccctgctgtcgtactgcctggtccattaccgcggcgatgacaaaatcaaaagcttcatg
tgggacctcatcgcccccggcgaggacggaagcacaaaggagctgcagaatcacctgggc
ttgtccgccccggttcctcggggcagaaagggtaaaaagatgaagacccagtccagctct
ttcgacatccacaaggccgagtggctcaggaaacacaaccccgagcacatgcttcaggat
gacggctacaagaagcacctgaagcaccactgcaacaaggtgctgctcagggtcagaatg
ctctactacctgaaacaagaggtgataggaagcctggcccagaaggtgttggatggcggg
gactccagtgaggtaaagatctgggttccagatccggaccattcagacctgccggccctg
tggtgggatgcgatcgctgacaagtgtctgctgcttggcatctttaagcatggttatgaa
aagtacaacactattcgtgcggacccgaccctgtgcttcttagagcgcgtgggacggcca
gatgagaaggccatcgctgcagagcagaggagcaacgatttcatggacggggatgtggac
gatccagagtacaagcctgctccagctctgttgaaggacgacatggaggatgacgcctct
tctcctggagacttggtcgtctctgataatgctggagacgcagctccggtgactgaaggc
cagaccacctactggccgtccccgtcggtgctgacggcccggctgaggcggctcatcacg
gcctcccagcgctacaccaaaagccggcagatcctgcagatccaccagacgcagacgcag
acgcagtcgcagtcccagcaggccttggtcctgtctgccccgctctgcccgctgcccccc
accgtcaacgacacgctcaaccccaagatggctgccaagattgaacgtcagcaacggtgg
acgaggcgagaggaggccgacttctaccgagtcgtctccaccttcggcgtggtctttgac
ccaaacctgggccgcttcgactggaccaagttcagggccatggctcgactgcacaagaag
accgacgagagcctgcagaagtacctgtgcgccttcaccgccatgtgtcgccgggtgtgc
cgcctgccgcccaaggacggagactcgggggcggacccgtctctgaccatccagcccatc
acagaggagcgggcgtcccgtaccctgtaccgcgtggagctgctccgccaggtccgggag
caggtcctgcgccaccctctgctcttcgagcgcctgtcgctctgccagctgagctccgac
ctgcccgtgtggtgggaggccggggctcacgaccgcgacctgctggtcggcgccgccaag
cacggcgtgagccgcaccgactaccacatcctccgagaccccgagctcagcttcatgacg
gcgcagcgcaactacagccagaccaaggcggcgcagcagcagggccgcccccccgccgcg
ctggcggcgctggcgggctcgccgctgccgccgcccgcccacagggacccggaccccggg
gagctcgtccccaaggtggagccgccctcggaggaggaggagggcaaagggatcaaggcc
gagggctggagcccgcctcccgctccagccacgcccaccggcctggaagagaagcccgtt
tccatggagatggacattgacaggcagatggcggcggcacgcaccaagcctctcacgccc
aactcctcggagaagaaacccaagaagtcgagcaagagggggcgcagggaggcccggcgc
ggctcggggtccgactcggacggctcctcctccagctcttcgtcacgttcctcgtcgtcg
tcttcatccacctcctcctcctcctcacattccggctccagctcgtcttcctcgtcgtcc
tcctgctcctccggctcctcctcgtcttcgtcctcctcctcgtcctcttccgacagcgaa
agtgagggggaggaggagaagaagaaagtgccagcagccgccggcgtcaaggccttcgac
gaggacagcgtggcgtctctgagcgcgacgcgggatgaagcgcaggacccccacgtggct
gagaacggcgtgtccagcaactcgttccacccgtttcagggcggagggtacatgttggcg
gcgtcctactggcccaaggatcgtgtgatcataaaccgcctggacagcatctgccaggcg
gtgctcaagggcaaatggcccggcccgcgtcgggtctacgagcccggaggcgccgtggcc
tccttctacaccaccaagctgctggacaacgccaacagcctgtgcgaggacccctctgcc
tcgcctcaggggtcaaaggtgaccaagcatgttgcagaaaacaaggagttctcagtaaaa
ctcaacgatcaggagggcgggctgaagctgaccttccagaagcagggtctgcctctgaag
aggccgctggagtcggaggaaggcccgcaggcccagcagcagtacctggcccggctgcac
gagctgcagagcgcgtcggacacgggcctggctgacatcagcaacccccagagcagcttg
ccgacggtttctccaggtctgaccggtcagatgaggctgaacggagcgctggacggtcag
cccatcgtcaaaaagcggaggggcaggaggaagaacgtggagggaatggacctgcttttc
atgaacaggaaccgagtccctgctgttaatcatcaggtgccgccggggtgggggggcatt
ggccaggtgggcttgagcggcgctgccgtgcccggcgtcagccagagcgccggtccggct
cccgccgactccgagagcagagtccccgttatcaacctcaaggacggcacccggctggcg
ggggacgacgcacccaggaagaaagacctggagtcgtggctgaaagagcaccccggcttt
gtggcggacacgggggccttcatccctggagtaaataagatgcagatgcagttccacttc
caggacggtcggcccaagcaaaaaaggcaccgctgtaggaaccccaacaagatcgacgtt
aacagcctgacgggggaggaaagggtccaaatcatcaacaggagaaatgcacgcaagatc
ggtggtgcctttgctcctcctctgaaggatctgtgccggttccttcaggagaatccagag
tacggcgtcccacccgagtgggctgatgtggtcaaacagtcgggctacctcccggagagc
atgtttgaccggatcctgacgggacccatcgttcccgaggaggtgagccggcgaggccgg
cggccgaagaaccccctggcgaaggcggcggcggctgcggcggcccccaacgcggcagcc
tcctccgtcggcctgaaccctctcctggctaacggccttctctctggtatggacctcacc
aacctgcaggccttccagcaaaacctccagagtttacagtctttgcagctcaccgcaggc
cttctggggctgccgtccgacgccagcaacctggccgcaagtaacttggctgctatgttt
cccatgatgctgtccggcatgaccggcttgcccaatctgattggcatgagcaccttgctg
gggaaacaggctcaggaaggagtcggaggctctgaagagaagacaaagggaaacgccagc
ggcggcgcagaggagccatcggccacacaagccccttctcacacctcggaccccaaagga
gaaaggacagagggctcggacatgactccttcctccacttccagctccgcctcccctgct
accgccacacaaagtgcttcagctgcctccgcagccaccagtcacccactttctcttaac
cccttgttactctccagtatgctttacccagggatgcttctcactccaggccttaacctt
cctgtgtctgccacacagccgcagagctcaaacagtgacctttccaccctcccatctgct
gccgcgcctcctcctgccacctcccagtcgccgtcgctggagacggaaaagccccgggca
gcgagagacgcagaggaggaggacgaggtgctggaagaggctttggatgaagacgacgac
gaggaggacgattctgcagaacaaaaagaaaacagtggtcccgaaggttcagcgaaggct
gattcatcttcatcagattctgggagctcatcttcagacaattcagactccagcgatgag
gactaa
DBGET
integrated database retrieval system
