Cololabis saira (Pacific saury): 133463973
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Entry
133463973 CDS
T09849
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04510
Focal adhesion
csai04512
ECM-receptor interaction
csai04518
Integrin signaling
csai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133463973 (col9a1b)
04518 Integrin signaling
133463973 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133463973 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133463973 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
csai00535
]
133463973 (col9a1b)
Proteoglycans [BR:
csai00535
]
Extracellular matrix (ECM) proteoglycans
Others
133463973 (col9a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133463973
NCBI-ProteinID:
XP_061601819
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All DBs
Position
17
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AA seq
678 aa
AA seq
DB search
MAGPPGIKGPFLLVLLQLVLICSSQSQGPVGPPGPAGVPGIDGIDGERGADGEDGSPGLD
GDGGKPGSSGLPGIPGNDGLTGPIGDPGPDGLFGQKGEPGKPGRRGAAGVGSDGPPGPSG
TGGLLGEVGKAGEMGSIGVRGPQGPRGSTGPRGAAGMLGSGDLCPNSCPPGTSGHPGLPG
MKGHKGVKGEAGEPGKQGHKGEEGDQGGSGEVGSQGPRGPQGIRGAMGMMGPKGEMGARG
LDGDPGPQGVSGASGDQGQRGVMGEPGPIGEMGVQGLRGITGLPGPKGDAGLPGVDGREG
IPGMPGSKGNIGKSGVPGEVGLQGLPGLLGAFGPKGQGGPKGDVGLSGLPGTLGSTGKPG
ERGEQGELGPIGPIGEPGDGGVQGPLGPAGKPGARGPRGDPGLPGLPGPPGMPGTKGERG
ELGESGPKGEQGGPGDEGDAGDKGDVGDQGESGPKGETGNLGEPGRKGPEGSRGQPGVEG
PAGSPGPRGMQGNRGSRGVRGSQGPAGKEPSNQHIKQVCMRVMQEQLAQLAASLRRPESG
AAGLPGKPGPPGAPGAQGDNGFPGQAGRRGLPGLKGPPGQLGLKGPKGELGDRGSRGFTV
RGPKGQPGPPGLPGESGKPGYGQDGRDGQRGTPGVPGQHGVPGPPGSAGPNGYCDPSACN
LQAGAVQQSLDVKGPAGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagggcccccaggcatcaaagggccatttcttttggttctcctgcagcttgtcctt
atttgctcctctcaaagccaaggacccgttggccctcctggacctgcaggtgtccctgga
atcgatggcatagacggtgaaaggggagcagatggcgaggacggttctcctgggcttgat
ggggatggagggaaacccggctcttcaggattaccgggaattcctggaaatgatggtttg
accggacccattggagatcctggacctgatggtctcttcggacagaaaggtgaacctggg
aaacctggacgtcgtggagctgctggcgttggatctgatggaccccctggaccttcgggg
accggaggacttctgggtgaagtgggaaaggctggagaaatggggtccatcggtgtgaga
gggccacagggacctcgtggatcaacaggaccccgaggtgcagctggaatgttaggcagt
ggagatctgtgtccgaactcttgtccaccaggcacctctgggcaccctggacttccaggc
atgaagggtcacaaaggtgtgaaaggtgaagcaggagaaccggggaaacaggggcataag
ggagaagagggagaccagggaggttcaggagaggtcggatcccaagggccaaggggacct
cagggaattcggggagccatgggaatgatgggccccaaaggagagatgggagcccgaggt
cttgatggagatccaggtcctcagggggtctcaggggcaagcggagaccaaggccagaga
ggtgtgatgggtgagcctgggcccataggtgaaatgggtgttcaaggtctacgcgggatc
acaggcctaccaggtcccaagggagatgctggcttaccaggtgtagatggtcgtgaaggt
attcctgggatgccaggttcaaagggaaatattgggaagtcgggcgttcctggagaggtt
ggacttcaggggcttcctggtttgcttggggcatttggaccaaaaggccagggtggccct
aagggagatgttggtctgtcaggattgcctggaacgttgggatctactggcaaacctggt
gagcgaggagaacagggagagctgggacctattggacccatcggcgaacctggagatgga
ggggtgcaaggccctctaggtccagctggcaagccaggtgcaaggggacctagaggtgac
cctggacttcctggtctgccaggtcctcctggcatgcctgggacaaaaggagagagggga
gaacttggagaatcaggacctaaaggagagcaaggaggaccgggtgatgaaggggatgct
ggagacaaaggggacgttggtgaccagggagaatctggacctaaaggagagactggtaac
cttggtgaacctggcagaaagggtccagagggaagtcgagggcaacctggcgttgagggg
cctgccggctcgcctggaccacgaggcatgcaagggaacaggggctcgcgtggagtcaga
gggtcccagggtcctgcgggtaaggagccaagtaatcagcacatcaagcaagtttgcatg
cgagtcatgcaagagcaactggctcagttagctgctagtttaaggaggccagagtctgga
gctgctggtttacctggaaaacctggccctcctggggctcccggggcccaaggagacaac
ggcttccctgggcaggctgggagaagaggcctcccaggactcaaagggccaccaggacaa
ttgggactcaaaggacccaaaggtgaattgggagacagagggtccagagggttcactgta
cgaggacccaaaggtcagccaggacctcctggacttcctggggagtcaggcaaacctggg
tatggccaagatggtcgtgatgggcaaagaggaacccctggtgttcccggacagcacggc
gtgcctgggcctcctggttcagcaggtccaaacggttactgtgacccgtcagcttgtaac
ctccaggctggggctgtgcagcagtctctggacgtgaagggcccagcagggaactaa
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